now in sci overlay

6 files changed, 0 insertions, 255 deletions

diff --git a/sci-libs/adolc/ChangeLog b/sci-libs/adolc/ChangeLog
deleted file mode 100644
index f24a320..0000000
--- a/sci-libs/adolc/ChangeLog
+++ /dev/null
@@ -1,11 +0,0 @@
-# ChangeLog for sci-libs/adolc
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: $
-
-*adolc-2.1.12 (30 Mar 2011)
-
-  30 Mar 2011; Sébastien Fabbro <bicatali@gentoo.org> +adolc-2.1.12.ebuild,
-  +files/adolc-2.1.12-autotools.patch, +files/adolc-2.1.12-sparse-openmp.patch,
-  +metadata.xml:
-  Initial import
-
diff --git a/sci-libs/adolc/Manifest b/sci-libs/adolc/Manifest
deleted file mode 100644
index 9c06b2c..0000000
--- a/sci-libs/adolc/Manifest
+++ /dev/null
@@ -1,6 +0,0 @@
-AUX 2.2.1-autotools.patch 6262 RMD160 3c1f26219138c30f836cf003b12d1b15852891f8 SHA1 2cb9309c6fff3a43424492ca0c173efc7b4f8ba0 SHA256 e14ac202ce87930637294b60fe04d79ee0de4e72d2dc0ad67d3413a36d60b9c2
-AUX 2.2.1-sparse-openmp.patch 697 RMD160 198842380b04cb602e16d0b98cf2869de66c51c2 SHA1 910fc4f27287d2236394d0b62238e4becf0518b3 SHA256 522a34c9ac434240e55e97fca7ae7b1ae3474e06131c42bdb918965944bb86b8
-DIST ADOL-C-2.2.1.tgz 2125619 RMD160 b571f43fea8f5bcfb6ff31dbb420a23af153c4df SHA1 d81b613ba9a7de43edf0fa2cb756b1088655c440 SHA256 603f9363f5e4b556c869c980f81485b1d522cfda1d7b0cebf5431f8eca487ea1
-EBUILD adolc-2.2.1.ebuild 810 RMD160 8e1944d9e97feddcc49be782d257272f61e4df40 SHA1 f3599b0e214f4a231a047939bd7e09063dc9e874 SHA256 b046e2300ac0eda3cc30100508596fc035f184f9e01d2567754c47b0914f10fd
-MISC ChangeLog 336 RMD160 8d32da58c16fcf436a4f89ae26355711f21ecf86 SHA1 5d23cef61d21d846c0b90ffba82bcffddf35a801 SHA256 380d9e7e87577e19c6997fe0374de50c312ab89adb5b4feef0cc55e37a5c2a84
-MISC metadata.xml 427 RMD160 95c85f303e6883ba7546e9b659db29f14360f195 SHA1 f664d5f8f3141e597384a2712a6dc702d55c7654 SHA256 dbccbfff23b0d47223a5098ee2aae71b87ce0373de80183767f39db667722396
diff --git a/sci-libs/adolc/adolc-2.2.1.ebuild b/sci-libs/adolc/adolc-2.2.1.ebuild
deleted file mode 100644
index 59e480c..0000000
--- a/sci-libs/adolc/adolc-2.2.1.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-
-EAPI=4
-inherit eutils autotools
-
-MYPN=ADOL-C
-
-DESCRIPTION="Automatic differentiation system for C/C++"
-HOMEPAGE="https://projects.coin-or.org/ADOL-C/"
-SRC_URI="http://www.coin-or.org/download/source/${MYPN}/${MYPN}-${PV}.tgz"
-
-LICENSE="|| ( CPL GPL-2 )"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="examples openmp sparse static-libs"
-
-RDEPEND="sparse? ( sci-libs/colpack )"
-DEPEND="${RDEPEND}"
-
-S=${WORKDIR}/${MYPN}-${PV}
-
-src_prepare() {
-	epatch "${FILESDIR}"/${PV}-autotools.patch
-	epatch "${FILESDIR}"/${PV}-sparse-openmp.patch
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		$(use_enable openmp) \
-		$(use_enable static-libs static) \
-		$(use_with sparse colpack)
-}
-
-src_test() {
-	emake test
-}
diff --git a/sci-libs/adolc/files/2.2.1-autotools.patch b/sci-libs/adolc/files/2.2.1-autotools.patch
deleted file mode 100644
index 541da2a..0000000
--- a/sci-libs/adolc/files/2.2.1-autotools.patch
+++ /dev/null
@@ -1,168 +0,0 @@
-diff -Nur ADOL-C-2.1.12.orig/ADOL-C/src/Makefile.am ADOL-C-2.1.12/ADOL-C/src/Makefile.am
---- ADOL-C-2.1.12.orig/ADOL-C/src/Makefile.am	2011-03-28 00:28:00.000000000 +0100
-+++ ADOL-C-2.1.12/ADOL-C/src/Makefile.am	2011-03-30 05:49:17.000000000 +0100
-@@ -19,7 +19,6 @@
- endif
- 
- AM_CPPFLAGS          = -I$(top_srcdir)/ADOL-C 
--
- INCLUDES             = -I$(top_builddir)/ADOL-C
- 
- if SPARSE
-@@ -63,8 +62,7 @@
-                        int_reverse_s.c int_reverse_t.c 
- 
- libadolc_la_LIBADD   = drivers/libdrivers.la sparse/libsparse.la \
--                       tapedoc/libtapedoc.la
--libadolc_la_LDFLAGS  += @COLPACK_LIBS@
-+                       tapedoc/libtapedoc.la @COLPACK_LIBS@
- else
- libadolc_la_SOURCES  = adalloc.c malloc.c adouble.cpp \
-                        convolut.c fortutils.c\
-diff -Nur ADOL-C-2.1.12.orig/ADOL-C/test/Makefile.am ADOL-C-2.1.12/ADOL-C/test/Makefile.am
---- ADOL-C-2.1.12.orig/ADOL-C/test/Makefile.am	2011-03-28 00:28:00.000000000 +0100
-+++ ADOL-C-2.1.12/ADOL-C/test/Makefile.am	2011-03-30 04:45:33.000000000 +0100
-@@ -10,7 +10,7 @@
- ## 
- ##############################################################################
- 
--noinst_PROGRAMS         = powexam speelpenning fminmax
-+check_PROGRAMS         = powexam speelpenning fminmax
- 
- speelpenning_SOURCES    = speelpenning.cpp
- 
-diff -Nur ADOL-C-2.1.12.orig/configure.ac ADOL-C-2.1.12/configure.ac
---- ADOL-C-2.1.12.orig/configure.ac	2011-03-28 00:28:00.000000000 +0100
-+++ ADOL-C-2.1.12/configure.ac	2011-03-30 05:05:10.000000000 +0100
-@@ -50,7 +50,7 @@
- else
-    _lib=lib
- fi
--libdir='${prefix}/${_lib}'
-+libdir="${prefix}/${_lib}"
- AC_SUBST(_lib)
- AC_SUBST(libdir)
- 
-@@ -160,17 +160,18 @@
- 		[colpack=${abs_srcdir}/ThirdParty/ColPack])
- 
- if test "x${_lib}" != xlib ; then
--   dirlist="${_lib} lib build/${_lib} build/lib"
-+   dirlist="${libdir} ${_lib} lib build/${_lib} build/lib"
- else
--   dirlist="${_lib} build/${_lib}"
-+   dirlist="${libdir} ${_lib} build/${_lib}"
- fi
- 
-+if test x$colpack != xno; then
- AC_LANG_PUSH([C++])
- for dir in $dirlist ; do
-     unset ac_cv_header_ColPackHeaders_h
--    COLPACK_CFLAGS="-I$colpack/$dir/../include"
--    COLPACK_LIBDIR="$colpack/$dir"
--    COLPACK_LIBS="-L$COLPACK_LIBDIR -lColPack -Wl,-rpath,$COLPACK_LIBDIR"
-+    COLPACK_CFLAGS="-I$dir/../include/ColPack"
-+    COLPACK_LIBDIR="$dir"
-+    COLPACK_LIBS="-L$COLPACK_LIBDIR -lColPack"
-     save_CPPFLAGS="$CPPFLAGS"
-     save_LIBS="$LIBS"
-     CPPFLAGS="$CPPFLAGS $COLPACK_CFLAGS"
-@@ -194,6 +195,10 @@
-     fi
- done
- AC_LANG_POP([C++])
-+else
-+	have_colpack=no
-+fi
-+
- AM_CONDITIONAL(HAVE_LIBCOLPACK,[test x$have_colpack = xyes])
- if test x$have_colpack = xyes; then 
-    # test if the directories exists and what is the real path
-@@ -201,13 +206,13 @@
-    # and these variables are useless
-    COLPACK_LIBDIR=`readlink -f $COLPACK_LIBDIR`
-    if test -n $COLPACK_LIBDIR ; then
--      colpack_incdir=`readlink -f $COLPACK_LIBDIR/../include`
-+      colpack_incdir=`readlink -f $COLPACK_LIBDIR/../include/ColPack`
-       if test -n $colpack_incdir ; then
-       	 COLPACK_CFLAGS="-I$colpack_incdir"
-       else
- 	 COLPACK_CFLAGS=""
-       fi
--      COLPACK_LIBS="-L$COLPACK_LIBDIR -lColPack -Wl,-rpath,$COLPACK_LIBDIR"
-+      COLPACK_LIBS="-L$COLPACK_LIBDIR -lColPack"
-    else
-       COLPACK_CFLAGS=""
-       COLPACK_LIBS=""
-@@ -272,7 +277,7 @@
- AC_MSG_CHECKING(whether to build parallel example)
- AC_ARG_ENABLE(parexa,
-             [AS_HELP_STRING([--enable-parexa],
--                            [build parallel example [default=disabled], if enabled -with-openmp-flag=FLAG required])],
-+                            [build parallel example [default=disabled], if enabled, --enable-openmp required])],
-             [parexa=$enableval
-              AC_MSG_RESULT(yes)],
-             [parexa="no"
-@@ -280,16 +285,7 @@
- AM_CONDITIONAL(PAREXA,[test x${parexa} = xyes])
- 
- # ADOL-C Compilation flags
--AC_MSG_CHECKING(which flag to use to enable OpenMP)
--AC_ARG_WITH(openmp-flag,
--            [AS_HELP_STRING([--with-openmp-flag=FLAG],
--                            [use FLAG to enable OpenMP at compile time [default=none]])],
--            [ac_adolc_openmpflag=$withval
--             msg_result=$withval
--             AC_MSG_RESULT($ac_adolc_openmpflag)],
--            [ac_adolc_openmpflag=""
--             msg_result="none"
--             AC_MSG_RESULT($ac_adolc_openmpflag)])
-+AC_OPENMP
- 
- AC_MSG_CHECKING(which CFLAGS to use)
- AC_ARG_WITH(cflags,
-@@ -300,7 +296,7 @@
-                 test x${adolc_harddebug} == xyes ; then
-                 ac_adolc_cflags="$ac_adolc_cflags -g -O0"
-              fi
--             ac_adolc_cflags="$ac_adolc_cflags $ac_adolc_openmpflag"
-+             ac_adolc_cflags="$ac_adolc_cflags $OPENMP_CFLAGS"
-              AC_SUBST(ac_adolc_cflags)
-              AC_MSG_RESULT($ac_adolc_cflags)],
-             [if test "$ac_shell_cflags" = "not_set"; then
-@@ -312,7 +308,7 @@
-              else
-                 ac_adolc_cflags="$CFLAGS"
-              fi
--             ac_adolc_cflags="$ac_adolc_cflags $ac_adolc_openmpflag"
-+             ac_adolc_cflags="$ac_adolc_cflags $OPENMP_CFLAGS"
- 
-              AC_SUBST(ac_adolc_cflags)
-              AC_MSG_RESULT($ac_adolc_cflags)])
-@@ -326,7 +322,7 @@
-                 test x${adolc_harddebug} == xyes ; then
-                 ac_adolc_cxxflags="$ac_adolc_cxxflags -g -O0"
-              fi
--             ac_adolc_cxxflags="$ac_adolc_cxxflags $ac_adolc_openmpflag"
-+             ac_adolc_cxxflags="$ac_adolc_cxxflags $OPENMP_CFLAGS"
-              AC_SUBST(ac_adolc_cxxflags)
-              AC_MSG_RESULT($ac_adolc_cxxflags)],
-             [if test "$ac_shell_cxxflags" = "not_set"; then
-@@ -338,7 +334,7 @@
-              else
-                 ac_adolc_cxxflags="$CXXFLAGS"
-              fi
--             ac_adolc_cxxflags="$ac_adolc_cxxflags $ac_adolc_openmpflag"
-+             ac_adolc_cxxflags="$ac_adolc_cxxflags $OPENMP_CFLAGS"
-             AC_SUBST(ac_adolc_cxxflags)
-              AC_MSG_RESULT($ac_adolc_cxxflags)])
- 
-@@ -453,7 +449,7 @@
-   Use ADOL-C hard debug mode:       ${adolc_harddebug}
-   Use ADOL-C adouble zeroing mode:  ${adolc_stdczero}"
- 
--if [[ "x${ac_adolc_openmpflag}" != "x" ]] ; then
-+if [[ "x${OPENMP_CFLAGS}" != "x" ]] ; then
-     echo \
- "  Access thread number via errno:   ${adolc_tserrno}"
- fi
diff --git a/sci-libs/adolc/files/2.2.1-sparse-openmp.patch b/sci-libs/adolc/files/2.2.1-sparse-openmp.patch
deleted file mode 100644
index 241517c..0000000
--- a/sci-libs/adolc/files/2.2.1-sparse-openmp.patch
+++ /dev/null
@@ -1,20 +0,0 @@
---- ADOL-C-2.1.12.orig/ADOL-C/src/sparse/sparsedrivers.cpp	2011-03-28 00:28:00.000000000 +0100
-+++ ADOL-C-2.1.12/ADOL-C/src/sparse/sparsedrivers.cpp	2011-03-30 04:05:29.000000000 +0100
-@@ -598,6 +598,8 @@
- {
-     SparseHessInfos sHinfos;
-     TapeInfos *tapeInfos;
-+    ADOLC_OPENMP_THREAD_NUMBER;
-+    ADOLC_OPENMP_GET_THREAD_NUMBER;
- 
-     tapeInfos=getTapeInfos(tag);
-     memcpy(&ADOLC_CURRENT_TAPE_INFOS, tapeInfos, sizeof(TapeInfos));
-@@ -626,6 +628,8 @@
- {
-     SparseHessInfos sHinfos;
-     TapeInfos *tapeInfos;
-+    ADOLC_OPENMP_THREAD_NUMBER;
-+    ADOLC_OPENMP_GET_THREAD_NUMBER;
- 
-     tapeInfos=getTapeInfos(tag);
-     memcpy(&ADOLC_CURRENT_TAPE_INFOS, tapeInfos, sizeof(TapeInfos));
diff --git a/sci-libs/adolc/metadata.xml b/sci-libs/adolc/metadata.xml
deleted file mode 100644
index e5dda79..0000000
--- a/sci-libs/adolc/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci</herd>
-<longdescription lang="en">
-  The ADOLC system automatically calculates exact derivatives of a
-  C/C++ function.  It uses C++ overloading to record arithmetic
-  operations, which it plays back later in various ways to calculate
-  the requested values.
-</longdescription>
-</pkgmetadata>