diff options
| author |   Donnie Berkholz <dberkholz@gentoo.org> | 2010-08-17 16:23:05 -0500 |
|---|---|---|
| committer | Donnie Berkholz <dberkholz@gentoo.org> | 2010-08-17 16:23:05 -0500 |
| commit | 0c6f078304353eb1b6011bf84c7a1bbcff875d6a (patch) | |
| tree | f124fc45b7911482acf2dfab307620cd5e9a6f37 /sci-biology | |
| parent | Add shakerr: Macromolecular crystal structure precision calculator. (diff) | |
| download | dberkholz-0c6f078304353eb1b6011bf84c7a1bbcff875d6a.tar.gz dberkholz-0c6f078304353eb1b6011bf84c7a1bbcff875d6a.tar.bz2 dberkholz-0c6f078304353eb1b6011bf84c7a1bbcff875d6a.zip | |
probalign: fix for gcc 4.4
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/probalign/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/probalign/files/gcc-4.3.patch | 36 |
2 files changed, 27 insertions, 13 deletions
diff --git a/sci-biology/probalign/Manifest b/sci-biology/probalign/Manifest index 4b7ff3a..30b97dc 100644 --- a/sci-biology/probalign/Manifest +++ b/sci-biology/probalign/Manifest @@ -1,5 +1,5 @@ AUX 1.3-look-in-usr-bin-for-probalign.patch 584 RMD160 16b0112df505052f003e94e1ae9b691c3b98ff00 SHA1 fbcb633fa5c57c61d6d9a1c7e8df2f8c0b6a60e1 SHA256 312e2f0ae50ae66e3c384c2d3e73d5d360c2366a8659d35b0e5d19674fb0a47f -AUX gcc-4.3.patch 438 RMD160 7cf8e4661e2f973ba95e450a20f21807c4838b8f SHA1 cfa326205d497ae7156627e67a0a097ae08acbc3 SHA256 fd382a6cc25050b4fae74a6e3047cba5a31e73c623f31898b0fcbdefedaebad5 +AUX gcc-4.3.patch 1072 RMD160 cbaff1f665e5eada2836c97ef4b0d598208223b9 SHA1 e503ee43520732dad88ed192ff8ee5bfb41a9896 SHA256 d8bd9543e83561d1f080f740ec9dc0d8c5566c9e2b0521b5ca30573c6d1fcb25 AUX use-tmpdir.patch 2169 RMD160 cf5d03111e432d3e8fc33fa13983ca8a184a6c3f SHA1 13cd71a105d3df6411206a175e52728e6e29f410 SHA256 1739b17842c7e3decb899616d1ea779156ddf7833ba0f93c516de40e2a727e13 -DIST probaligngui_beta_1.3.tar.gz 1794865 RMD160 bb20fe4fd50015b839df78c4f179c21e6d0e041f SHA1 3456aa2d17c2ad42323e49f7530476679708210d SHA256 7343024dc7c2ae5fa415697bc1e1fe8accf93e515f093dea09ed1fc256c4f2a0 +DIST probaligngui_beta_1.3.tar.gz 1829882 RMD160 8dec6ef6f5aea3b1edb1d256c9311f27e1df4605 SHA1 3384fd5634f0f9600238461ffc369573b407f51e SHA256 a418d256d9b5e8a516b35b9a15cbe3f07e687f3381a64463b4e912ff38b9c4e4 EBUILD probalign-1.3_beta.ebuild 1608 RMD160 6063cf982c3fb5ed2c08065f7d76a093c25b6404 SHA1 0f8ffed7ea70426e5a11ed7a0356c0a28b113444 SHA256 5cb325388e6df995786a73d586fc13e9cab0953779d059d30481be55ad251789 diff --git a/sci-biology/probalign/files/gcc-4.3.patch b/sci-biology/probalign/files/gcc-4.3.patch index 3803dcc..cfb6e63 100644 --- a/sci-biology/probalign/files/gcc-4.3.patch +++ b/sci-biology/probalign/files/gcc-4.3.patch @@ -1,12 +1,26 @@ -diff -ur probaligngui_beta_1.3.orig/probalign/src/Main.cc probaligngui_beta_1.3/probalign/src/Main.cc ---- probaligngui_beta_1.3.orig/probalign/src/Main.cc 2006-11-25 12:34:24.000000000 -0800 -+++ probaligngui_beta_1.3/probalign/src/Main.cc 2008-04-08 19:26:12.000000000 -0700 +diff -ur probaligngui_beta_1.3.orig//probalign/src/Main.cc probaligngui_beta_1.3//probalign/src/Main.cc +--- probaligngui_beta_1.3.orig//probalign/src/Main.cc 2010-08-17 14:10:21.238544093 -0500 ++++ probaligngui_beta_1.3//probalign/src/Main.cc 2010-08-17 16:15:54.968544093 -0500 @@ -14,6 +14,8 @@ - #include <iomanip>
- #include <iostream>
- #include <cerrno>
-+#include <climits>
-+#include <cstring>
-
- //struct for column reliability
-
+ #include <iomanip> + #include <iostream> + #include <cerrno> ++#include <climits> ++#include <cstring> + + //struct for column reliability + +Only in probaligngui_beta_1.3//probalign/src: Main.cc.orig +Only in probaligngui_beta_1.3//probalign/src: Main.cc.porig +Only in probaligngui_beta_1.3//probalign/src: Main.cc.rej +diff -ur probaligngui_beta_1.3.orig//probalign/src/PostProbs.cc probaligngui_beta_1.3//probalign/src/PostProbs.cc +--- probaligngui_beta_1.3.orig//probalign/src/PostProbs.cc 2010-08-17 14:10:21.238544093 -0500 ++++ probaligngui_beta_1.3//probalign/src/PostProbs.cc 2010-08-17 16:22:24.618544093 -0500 +@@ -6,6 +6,7 @@ + #include <time.h> + #include <ctype.h> + #include <assert.h> ++#include <cstdio> + #define TRACE 0 // 0: NOTRACE 1: TRACE + + //proba like settings |