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authorAuke Booij (tulcod) <auke@tulcod.com>2010-08-15 21:52:20 +0200
committerAuke Booij (tulcod) <auke@tulcod.com>2010-08-15 21:52:20 +0200
commita061777a24861507d0e6906b37389fb0beb99b95 (patch)
treeea4f586d41c5393aeee16aba7fa004c1f9a32728
parentRevert "Fix" (diff)
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Add READMEs
-rw-r--r--README.g-common30
-rw-r--r--README.g-cran12
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diff --git a/README.g-common b/README.g-common
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+==ABOUT==
+g-common is a package which is used to install packages which are not in the ebuild format as described in the Package Manager Specification, using "repository drivers" which read non-ebuild repositories and translate them into PMS-style data. Usage of these drivers is transparent and users shouldn't need to deal with these, except to install them.
+
+==USAGE==
+If you're using a package manager which has integrated support for g-common, please refer to your package manager's instructions. Package managers known to have g-common integration:
+- Portage (you can use layman to add repositories)
+If you're not using such a package manager, create a new local overlay, cd into it and execute:
+# g-common . sync <driver name> <remote repository uri>
+where:
+- . is the current directory
+- <driver name> is the name of the driver used to sync the repository
+- <remote repository uri> is the uri to the repository you'd like to sync
+Now you can generate an ebuild tree using:
+# g-common . generate-tree
+
+==DEVELOPMENT OF G-COMMON REPOSITORY DRIVERS==
+g-common drivers are executables called as the following system call:
+# <driver executable> <local overlay> <action> [arguments ...]
+where:
+- <driver executable> is the driver's executable's name
+- <local overlay> is the location where the driver can store data in a dot-prepended directory as needed
+- <action> is the action g-common wishes the driver to execute
+- [arguments ...] is an optional list of arguments
+Requiredly supported actions are:
+- sync <uri> : download new data from the remote repository
+- generate-metadata : generate any PMS-style files from the previously downloaded files before ebuilds are written by g-common
+- list-packages : list all packages in a <category>/<package> <version> format (one package per line)
+- list-categories : lists all the names of categories, one per line
+- package <category>/<package> <version> : return a key=value list of settings for some package, no quotes, to be parsed by "export" line by line
+- any PMS-supported phase (src_prepare, pkg_unpack, pkg_postinst, etc..) : executes whatever needs to happen in that PMS phase. The environment variables are filled according with the package that's being built. Nonzero return code results in a die of the ebuild
diff --git a/README.g-cran b/README.g-cran
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+==ABOUT==
+G-CRAN is a package which is used to install packages from CRAN-style (Central R Archive Network) repositories, that is, from R package repositories. R, in turn, is a language used for statistical and biocomputational research and development. Hence, there are also two repositories alongside CRAN called the Bioconductor repositories, which contain biological code and data.
+
+==USAGE==
+To use G-CRAN, you need to use g-common, or, if your package manager has integrated g-common support, whatever system your package manager uses. Simply install G-CRAN (note that G-CRAN depends on R) and g-common, and use g-common as described in its documentation.
+
+==EXAMPLE REPOSITORIES==
+Some supported repositories include:
+- CRAN: http://cran.r-project.org/
+- Bioconductor code: http://bioconductor.org/packages/devel/bioc
+- Bioconductor annotation: http://bioconductor.org/packages/devel/data/annotation
+Please note that the Bioconductor annotation repository depends on the code repository, so please install both if you'd like to use the Bioconductor databases.