dev-python/pyfaidx: version bump 0.8.1.1

Signed-off-by: Michael Schubert <mschu.dev@gmail.com>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

7 files changed, 27 insertions, 52 deletions

diff --git a/dev-python/pyfaidx/Manifest b/dev-python/pyfaidx/Manifest
new file mode 100644
index 000000000..c66bceba8
--- /dev/null
+++ b/dev-python/pyfaidx/Manifest
@@ -0,0 +1 @@
+DIST pyfaidx-0.8.1.1.tar.gz 103060 BLAKE2B 6910b77950a55885d1e0ae9f30172ec5c1d14320fdb2bad264e21d8f2e7f212f725f2608297ac5b6a2ec8d366b1385245694b2a70410deca8be1765db0683835 SHA512 26d130770069aed9bd378e54f338b6c66840114e6cddfdc971b6496fa30ee651181f2225d372499992b63ba8b0c6d0a7ed827a210dc3f78c0c8592bdb73211b3
diff --git a/sci-biology/pyfaidx/metadata.xml b/dev-python/pyfaidx/metadata.xml
index 47cc39d79..b0e39cc41 100644
--- a/sci-biology/pyfaidx/metadata.xml
+++ b/dev-python/pyfaidx/metadata.xml
@@ -5,10 +5,6 @@
 		<email>mschu.dev@gmail.com</email>
 		<name>Michael Schubert</name>
 	</maintainer>
-	<maintainer type="project">
-		<email>sci-biology@gentoo.org</email>
-		<name>Gentoo Biology Project</name>
-	</maintainer>
 	<upstream>
 		<remote-id type="pypi">pyfaidx</remote-id>
 		<remote-id type="github">mdshw5/pyfaidx</remote-id>
diff --git a/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild b/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild
new file mode 100644
index 000000000..86465aecd
--- /dev/null
+++ b/dev-python/pyfaidx/pyfaidx-0.8.1.1.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2024 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+DISTUTILS_USE_PEP517=setuptools
+PYTHON_COMPAT=( python3_{10..12} )
+
+inherit distutils-r1 pypi
+
+DESCRIPTION="Efficient pythonic random access to fasta subsequences"
+HOMEPAGE="https://github.com/mdshw5/pyfaidx"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+
+REPEND="dev-python/importlib_metadata[${PYTHON_USEDEP}]"
+
+EPYTEST_DESELECT=(
+	# needs external file
+	tests/test_Fasta_bgzip.py
+)
+
+distutils_enable_tests pytest
diff --git a/profiles/updates/2Q-2024 b/profiles/updates/2Q-2024
new file mode 100644
index 000000000..bf7fb5174
--- /dev/null
+++ b/profiles/updates/2Q-2024
@@ -0,0 +1 @@
+move sci-biology/pyfaidx dev-python/pyfaidx
diff --git a/sci-biology/pyfaidx/Manifest b/sci-biology/pyfaidx/Manifest
deleted file mode 100644
index 0bb3b35f4..000000000
--- a/sci-biology/pyfaidx/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST pyfaidx-0.5.9.2.tar.gz 93438 BLAKE2B 3d3d225907f8bd04fdf4b20d608d02cd0e5a723f2a73df24b732992f139102e2a9042c37c5a73f762256fd007dd7e14bace910c0961e60870926c2ce1dca3ac3 SHA512 57b94421d6858fa2bd7b867b386d47d53d3afd75878b08e6e32fb7d8f4942f2a051e0123e6c4b4395abe656d639fa4f47afadbd8c4b2cbc001c5113cbbf96af4
-DIST pyfaidx-0.7.2.1.tar.gz 102951 BLAKE2B d8c76bb9f817a7f4a0f3aa58ef20344c1d5aa5e99a181f1171145264baab4603d772d7c37f8286654442ee0f6bf3b62f8d94d6e0495a65f54495e084403c0b92 SHA512 20833c2e11f942aa69b524170a0203ca4d035d058d1d8029c2fab50c4b60a4e947cbbdc0dc954e4ecdefbf07d095f861a86dbebdfdac4bdbecf65a691226e25c
diff --git a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild b/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
deleted file mode 100644
index bec223f6c..000000000
--- a/sci-biology/pyfaidx/pyfaidx-0.5.9.2.ebuild
+++ /dev/null
@@ -1,22 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-
-inherit distutils-r1
-
-DESCRIPTION="Efficient pythonic random access to fasta subsequences"
-HOMEPAGE="https://pypi.python.org/pypi/pyfaidx https://github.com/mdshw5/pyfaidx"
-SRC_URI="https://github.com/mdshw5/pyfaidx/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-REPEND="dev-python/six[${PYTHON_USEDEP}]"
-
-#distutils_enable_tests nose
diff --git a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild b/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
deleted file mode 100644
index 14f557869..000000000
--- a/sci-biology/pyfaidx/pyfaidx-0.7.2.1.ebuild
+++ /dev/null
@@ -1,24 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_PEP517=setuptools
-
-inherit distutils-r1 pypi
-
-DESCRIPTION="Efficient pythonic random access to fasta subsequences"
-HOMEPAGE="https://pypi.python.org/pypi/pyfaidx https://github.com/mdshw5/pyfaidx"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-# Test issues reported upstream:
-# https://github.com/mdshw5/pyfaidx/issues/208
-RESTRICT="test"
-
-REPEND="dev-python/six[${PYTHON_USEDEP}]"
-
-distutils_enable_tests pytest