Version Bump

(Portage version: 2.2.0_alpha41/git/Linux x86_64, signed Manifest commit with key 70EB7916)

7 files changed, 16 insertions, 274 deletions

diff --git a/sci-biology/gbrowse/ChangeLog b/sci-biology/gbrowse/ChangeLog
index b66d69a42..e36ad4701 100644
--- a/sci-biology/gbrowse/ChangeLog
+++ b/sci-biology/gbrowse/ChangeLog
@@ -2,6 +2,15 @@
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
 # $Header: /var/cvsroot/gentoo-x86/sci-biology/generic-genome-browser/ChangeLog,v 1.10 2007/07/29 17:07:38 phreak Exp $
 
+*gbrowse-2.38 (26 Jun 2011)
+
+  26 Jun 2011; Justin Lecher <jlec@gentoo.org> -gbrowse-2.26.ebuild,
+  -files/GBrowseInstall.pm-2.26.patch,
+  -files/GBrowseInstall.pm-disable-gbrowse_metadb_config.pl.pm-2.26.patch,
+  -gbrowse-2.33.ebuild, -files/GBrowseInstall.pm-2.33.patch,
+  +gbrowse-2.38.ebuild, +files/GBrowseInstall.pm-2.38.patch:
+  Version Bump
+
   25 Jun 2011; Justin Lecher <jlec@gentoo.org> -gbrowse-1.70.ebuild,
   -gbrowse-2.00.ebuild, gbrowse-2.26.ebuild, gbrowse-2.33.ebuild:
   Cleaned ebuild, 'http://search.cpan.org/CPAN' found in thirdpartymirrors
diff --git a/sci-biology/gbrowse/Manifest b/sci-biology/gbrowse/Manifest
index 80794da4a..101b58a14 100644
--- a/sci-biology/gbrowse/Manifest
+++ b/sci-biology/gbrowse/Manifest
@@ -1,14 +1,11 @@
 -----BEGIN PGP SIGNED MESSAGE-----
 Hash: SHA256
 
-AUX GBrowseInstall.pm-2.26.patch 2647 RMD160 5acd26d95bf0c26edb0f816e840b43ef99a88ea3 SHA1 39362a38cff41097ead8c49de5eaf94d77c59f02 SHA256 1aee7359bc1b036f5d214975a5ea2395a507f04b0ee839ed3a1543a0ab4fb3c6
-AUX GBrowseInstall.pm-2.33.patch 1278 RMD160 96c7f2c66537c6e01cf2619018f608607c0927dc SHA1 a3cb874018d2c7a5acf34381971cc09d83a13f73 SHA256 5a1018f582c2e0ffca034d04ce73f678dd879d90932e4e89ea664c7c113f4b7c
-AUX GBrowseInstall.pm-disable-gbrowse_metadb_config.pl.pm-2.26.patch 1001 RMD160 6784a8d01714be237247d56df13de96681f3aea5 SHA1 55c3eac7eb1e11c766b8d430c7dd36336347ef50 SHA256 a25f49dba6609a25c799d0290713038b608f8aef1a4275eff5f1f12e5225a19a
+AUX GBrowseInstall.pm-2.38.patch 1278 RMD160 96c7f2c66537c6e01cf2619018f608607c0927dc SHA1 a3cb874018d2c7a5acf34381971cc09d83a13f73 SHA256 5a1018f582c2e0ffca034d04ce73f678dd879d90932e4e89ea664c7c113f4b7c
 AUX gbrowse-slave.default 210 RMD160 77245190ab0d3a543f3103bb6f21864f73ea1cde SHA1 a19d60edd3fdc1f059ed8fa58f7e91fc47ec92dc SHA256 e4e6d68ade29681f442b2e1c7f8abbc7ff3255b3b8db3c59ed6368ba561d7d66
 AUX gbrowse-slave.init.d 2196 RMD160 8b565d1be23c89cbae0f9fd5cd2201f47a564b94 SHA1 738bc8f06486a0e6caa72642f79f9b7dbb356524 SHA256 de511a92757153ee648eb6cd39e3c69c1e30fa2c2ed406f24c08571c72609219
 AUX gbrowse.conf.vhosts.d 740 RMD160 e24f5132e37a84dd0bb9a39e2de99cd11d260844 SHA1 2c44fdcf04bef92eb6210d4e6667b994e5643a13 SHA256 8acd5a067ab3dd42cff0ab7cb0d783b2409ccb872590eba32ea55d4929f65f21
-DIST GBrowse-2.26.tar.gz 11937473 RMD160 c2c9d988e3183637b0a97f00e8de1387ad107eab SHA1 3153afc0ef7e6ea8ca6879343028673fdb062501 SHA256 4ac5c0fd87c5ab64b3c52ebb51f51433cb8c6062fd80a56d3de91f24594d3a3f
-DIST GBrowse-2.33.tar.gz 11915644 RMD160 0e2f054b4bcc2748895a856620af7e50f5e15038 SHA1 f31cbe960904b5a2ea4b7eae7a9d78baaf29fce0 SHA256 063114b844776a9500528437fb3dbc60f47a8ac380d910bd6b3148ec7cc0cc4b
+DIST GBrowse-2.38.tar.gz 11966992 RMD160 dde50d49ee1b228103dffc9701e450ac9e3be3cd SHA1 4228a4938cbdbc409ddb23f81cd3186cdf15391d SHA256 acf7d3d0f32d0138640b2773ed580572ff63d646d4538f354dec8986607aa275
 DIST README-gff-files 5309 RMD160 8ba184fa8a6b921f925143cf53de06e3da353023 SHA1 ad2d2b3133c73a05ace4a0107ff1a3a4221bc8f8 SHA256 21f4f026b212698c5aac0e82045670f8397ab50fdfe74b938fcbc71a1d36c82a
 DIST Refseq_Genome_TBLASTX.tar.gz 56482234 RMD160 e188d9dfe12bed3fd299be4625f7e658f54bb8c4 SHA1 72ec3de9b9ca0e10c2dd8dcda24f9be74f98cf09 SHA256 7036bdd9aefbf44e384df83f4c1e973c1ab3eac8fe74b37499c4a3f1c55a18af
 DIST fly.fasta.gz 37349852 RMD160 4bedfcc5d0ea3d325f3d3e446713251a8ce34ca3 SHA1 8f2c7a2f24dbab0f27c73009fe51efb8f41d6769 SHA256 892ed03e17edd3469f1ed00cb9967fb905bbac57c1cb7858667381f34a6bfeea
@@ -19,14 +16,13 @@ DIST worm.fasta.gz 30593662 RMD160 674ef3d09cdfaa5d748f18c0e769f0a5ca3d48cf SHA1
 DIST worm.gff.gz 65789458 RMD160 ddced7c965963ce41a10bdecae949731ed305121 SHA1 ccfb0f287e27ff7849b099c81d811f468a7e617c SHA256 afd63c65c3fdb0ba8a1cf455bd4477a2d5d27d5b0e88c6a5a10d156d0567374f
 DIST yeast.fasta.gz 3801757 RMD160 5545054cf6ffa5381c7992141144107076fdf62e SHA1 c36fddc5fd2c79e01292f66644088654304bc438 SHA256 bf51cbced31aa6a30bca43cc72fdb53194fbb403407e2ebb9d70c901ab072e6d
 DIST yeast.gff.gz 249814 RMD160 64538d18de23d930915938bd00ae4a94a52f3960 SHA1 ec753b1ae409e1377f568531a53be8985a7bfa2e SHA256 20c93e6ba9457896a693d13e8fd8fa00d77acbb55aee9b19a31c2b29c4b7e9b1
-EBUILD gbrowse-2.26.ebuild 6919 RMD160 c75670fe70dbb1b2983568e21d9d91b1728eb97f SHA1 f9c778fde5eae6165b3eb51c40744780a15987a9 SHA256 088ad6461ece19a35d40a721f8a6adfb8bed43f076e25b530537a5216c4fbd65
-EBUILD gbrowse-2.33.ebuild 6136 RMD160 9da72299772f44f80f9a653840fa167d04c1d3e5 SHA1 9a65efd853905e653b5a781128e45cc0e00e611a SHA256 db0cc819ad165d509c935e4cef5be3ee1f47d0e0a0a1ecb697ef6290b7259ad5
-MISC ChangeLog 2181 RMD160 c900c81f81e249ceaab92cece31b0a7ce623ff74 SHA1 82f8c139dc4ead52ac81ad2dc1fd5ea1674fb18f SHA256 5be280bf8d600e6dc195554af6cc3d861c891a82713fa1c24ef6a1e8354b39b1
+EBUILD gbrowse-2.38.ebuild 6136 RMD160 9da72299772f44f80f9a653840fa167d04c1d3e5 SHA1 9a65efd853905e653b5a781128e45cc0e00e611a SHA256 db0cc819ad165d509c935e4cef5be3ee1f47d0e0a0a1ecb697ef6290b7259ad5
+MISC ChangeLog 2531 RMD160 a666bbe4d2aa432f678eb56d321db77686990b45 SHA1 d4950185a71e503373f25af3466fd876d2996249 SHA256 2c805b6e02263dfaf7b2c87ed68e8da2a8cbc1d23409968c36037105338038da
 MISC metadata.xml 572 RMD160 bc941571413238acb3d77e61d49b959737ed4f5a SHA1 0c05303509c0e2dd21b37fc93c936809db49e530 SHA256 89b9964a9404a95dbb622a91735348da8e66d34d7dd7e7f144ed8c0159c43e31
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.17 (GNU/Linux)
 
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-q8IAniINzT54e4XMjgdHP225UPM3zVPE
-=iwop
+iEYEAREIAAYFAk4G56MACgkQgAnW8HDreRaXVQCgwiv8qpUdbIu7rc522SjTi/lq
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+=+CVr
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diff --git a/sci-biology/gbrowse/files/GBrowseInstall.pm-2.26.patch b/sci-biology/gbrowse/files/GBrowseInstall.pm-2.26.patch
deleted file mode 100644
index 4c17f8d9a..000000000
--- a/sci-biology/gbrowse/files/GBrowseInstall.pm-2.26.patch
+++ /dev/null
@@ -1,72 +0,0 @@
---- install_util/GBrowseInstall.pm.ori	2010-11-27 12:01:58.000000000 +0100
-+++ install_util/GBrowseInstall.pm	2010-11-27 12:02:15.000000000 +0100
-@@ -436,8 +436,8 @@
- 	$self->ownership_warning($databases,$user);
-     }
- 
--    chmod 0755,File::Spec->catfile($self->install_path->{'etc'},'init.d','gbrowse-slave');
--    $self->fix_selinux;
-+    # chmod 0755,File::Spec->catfile($self->install_path->{'etc'},'init.d','gbrowse-slave');
-+    # $self->fix_selinux;
- 
-     my $base = basename($self->install_path->{htdocs});
- 
---- install_util/GBrowseInstall.pm.ori	2011-02-14 13:39:46.000000000 +0100
-+++ install_util/GBrowseInstall.pm	2011-02-14 13:41:50.000000000 +0100
-@@ -438,25 +438,25 @@
-     $gid =~ /^(\d+)$/;
-     $gid = $1;
-     
--    unless (chown $uid,$gid,$tmp) {
--	$self->ownership_warning($tmp,$user);
--    }
-+#   unless (chown $uid,$gid,$tmp) {
-+#	$self->ownership_warning($tmp,$user);
-+#   }
- 
-     my $htdocs_i = File::Spec->catfile($self->install_path->{htdocs},'i');
-     my $images   = File::Spec->catfile($tmp,'images');
-     my $htdocs = $self->install_path->{htdocs};
--    chown $uid,-1,$htdocs;
--    {
--	local $> = $uid;
--	symlink($images,$htdocs_i);  # so symlinkifowner match works!
--    }
--    chown $>,-1,$self->install_path->{htdocs};
-+#    chown $uid,-1,$htdocs;
-+#    {
-+#	local $> = $uid;
-+#	symlink($images,$htdocs_i);  # so symlinkifowner match works!
-+#    }
-+#    chown $>,-1,$self->install_path->{htdocs};
- 
-     my $databases = $self->install_path->{'databases'};
-     
--    unless (chown $uid,$gid,glob(File::Spec->catfile($databases,'').'*')) {
--	$self->ownership_warning($databases,$user);
--    }
-+#    unless (chown $uid,$gid,glob(File::Spec->catfile($databases,'').'*')) {
-+#	$self->ownership_warning($databases,$user);
-+#    }
- 
-     # chmod 0755,File::Spec->catfile($self->install_path->{'etc'},'init.d','gbrowse-slave');
-     # $self->fix_selinux;
---- install_util/GBrowseInstall.pm.ori	2011-02-14 13:50:41.000000000 +0100
-+++ install_util/GBrowseInstall.pm	2011-02-14 13:51:46.000000000 +0100
-@@ -470,11 +470,11 @@
-     my @inc           = map{"-I$_"} split ':',$self->added_to_INC;
-     system $perl,@inc,$metadb_script;
- 
--    if (Module::Build->y_n(
--	    "It is recommended that you restart Apache. Shall I try this for you?",'y'
--	)) {
--	system "sudo /etc/init.d/apache2 restart";
--    }
-+#    if (Module::Build->y_n(
-+#	    "It is recommended that you restart Apache. Shall I try this for you?",'y'
-+#	)) {
-+#	system "sudo /etc/init.d/apache2 restart";
-+#    }
-     
-     print STDERR "\n***INSTALLATION COMPLETE***\n";
-     print STDERR "Load http://localhost/$base for demo and documentation.\n";
diff --git a/sci-biology/gbrowse/files/GBrowseInstall.pm-2.33.patch b/sci-biology/gbrowse/files/GBrowseInstall.pm-2.38.patch
index e91fe1634..e91fe1634 100644
--- a/sci-biology/gbrowse/files/GBrowseInstall.pm-2.33.patch
+++ b/sci-biology/gbrowse/files/GBrowseInstall.pm-2.38.patch
diff --git a/sci-biology/gbrowse/files/GBrowseInstall.pm-disable-gbrowse_metadb_config.pl.pm-2.26.patch b/sci-biology/gbrowse/files/GBrowseInstall.pm-disable-gbrowse_metadb_config.pl.pm-2.26.patch
deleted file mode 100644
index 0dde70406..000000000
--- a/sci-biology/gbrowse/files/GBrowseInstall.pm-disable-gbrowse_metadb_config.pl.pm-2.26.patch
+++ /dev/null
@@ -1,21 +0,0 @@
---- install_util/GBrowseInstall.pm.ori	2011-05-11 04:10:08.000000000 +0200
-+++ install_util/GBrowseInstall.pm	2011-05-11 04:10:26.000000000 +0200
-@@ -463,12 +463,12 @@
- 
-     my $base = basename($self->install_path->{htdocs});
- 
--    # Configure the databases, if needed.
--    print STDERR "Updating user account database...\n";
--    my $metadb_script = File::Spec->catfile("bin", "gbrowse_metadb_config.pl");
--    my $perl          = $self->perl;
--    my @inc           = map{"-I$_"} split ':',$self->added_to_INC;
--    system $perl,@inc,$metadb_script;
-+#    # Configure the databases, if needed.
-+#    print STDERR "Updating user account database...\n";
-+#    my $metadb_script = File::Spec->catfile("bin", "gbrowse_metadb_config.pl");
-+#    my $perl          = $self->perl;
-+#    my @inc           = map{"-I$_"} split ':',$self->added_to_INC;
-+#    system $perl,@inc,$metadb_script;
- 
- #    if (Module::Build->y_n(
- #	    "It is recommended that you restart Apache. Shall I try this for you?",'y'
diff --git a/sci-biology/gbrowse/gbrowse-2.26.ebuild b/sci-biology/gbrowse/gbrowse-2.26.ebuild
deleted file mode 100644
index 363d18d67..000000000
--- a/sci-biology/gbrowse/gbrowse-2.26.ebuild
+++ /dev/null
@@ -1,170 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: $
-EAPI="2"
-
-inherit perl-module webapp
-
-MY_P="GBrowse-${PV}"
-
-DESCRIPTION="Display of genomic annotations on interactive web pages"
-HOMEPAGE="http://gmod.org/"
-SRC_URI="
-	mirror://sourceforge/gmod/${MY_P}.tar.gz
-	test? (
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/saccharomyces_cerevisiae.gff.bz2
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/Refseq_Genome_TBLASTX.tar.gz
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/README-gff-files
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/human.gff.tar.gz
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/yeast.fasta.gz
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/yeast.gff.gz
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/worm.fasta.gz
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/worm.gff.gz
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/fly.fasta.gz
-		http://sourceforge.net/projects/gmod/files/Generic%20Genome%20Browser/Sample%20Data%20Files/fly.gff.gz )"
-
-LICENSE="Artistic"
-# webapp ebuilds do not set SLOT
-KEYWORDS="~x86 ~amd64"
-IUSE="-minimal svg test" # lwp moby scf
-
-S="${WORKDIR}/${MY_P}"
-
-# TODO: dev-perl/MOBY, dev-perl/Bio-SCF, dev-perl/Safe-World (not compatible w/perl-5.10)
-# TODO: make sure www-servers/apache +cgi
-DEPEND="
-	>=dev-lang/perl-5.8.8
-	dev-perl/Capture-Tiny
-	>=sci-biology/bioperl-1.6
-	>=dev-perl/GD-2.07
-	dev-perl/IO-String
-	virtual/perl-Digest-MD5
-	>=dev-perl/CGI-Session-4.03
-	dev-perl/Statistics-Descriptive
-	>=dev-perl/Bio-Graphics-1.97
-	dev-perl/JSON
-	dev-perl/libwww-perl
-	svg? ( dev-perl/GD-SVG )"
-
-# TODO: based on the following message in apache/error_log the list of deps should be longer
-# GBROWSE NOTICE: To enable PDF generation, please enter the directory "/home/httpd" and run the commands: "sudo mkdir .inkscape .gnome2" and "sudo chown apache .inkscape .gnome2".  To turn off this message add "generate pdf = 0" to the [GENERAL] section of your GBrowse.conf configuration file., referer: http://127.0.0.1/gbrowse/cgi-bin/gbrowse_details/yeast?ref=chrII;start=90739;end=92028;name=YBL069W;class=Sequence;feature_id=881;db_id=annotations%3Adatabase
-
-#    *  Bio::DB::BigFile is not installed
-#    *  Bio::DB::Sam is not installed
-#    *  DBD::Pg is not installed
-
-RDEPEND="${DEPEND}
-	>=www-servers/apache-2.0.47
-	www-apache/mod_fastcgi
-	dev-perl/DBI
-	|| ( dev-perl/DBD-Pg dev-perl/DBD-mysql )
-	!minimal? (
-		dev-perl/File-NFSLock
-		dev-perl/FCGI
-		perl-core/Math-BigInt
-		perl-core/Math-BigInt-FastCalc
-		dev-perl/Math-BigInt-GMP
-		dev-perl/Digest-SHA1
-		dev-perl/Crypt-SSLeay
-		dev-perl/Net-SMTP-SSL
-		dev-perl/Net-OpenID-Consumer
-		virtual/perl-DB_File
-		dev-perl/DB_File-Lock
-		dev-perl/GD-SVG
-		dev-perl/Text-Shellwords
-		dev-perl/XML-Twig
-		dev-perl/XML-DOM
-		dev-perl/XML-Writer
-		dev-perl/XML-Parser
-		dev-perl/Bio-Das
-		dev-perl/Text-Shellwords
-	)"
-
-src_prepare() {
-	sed -i 's/return unless -t STDIN/return/' install_util/GBrowseInstall.pm || die
-	sed -i 's/process_/bp_process_/g' INSTALL || die
-	epatch "${FILESDIR}"/GBrowseInstall.pm-"${PV}".patch || die "Failed to patch"
-	epatch "${FILESDIR}"/GBrowseInstall.pm-disable-gbrowse_metadb_config.pl"${PV}".pm.patch || die "Failed to patch"
-}
-
-src_configure() {
-	# GBROWSE_ROOT is the root path in SRC_URI to be prepended
-	# /usr/share/webapps/gbrowse/2.03/htdocs/etc/gbrowse/GBrowse.conf
-
-	# if we use CONF="${D}${MY_HTDOCSDIR}"/etc/gbrowse the the install process
-	# will not find currently installed config files and therefore place *.conf
-	# files into "{$S}"/blib/conf/*.conf instead of creating "{$S}"/blib/conf/*.conf.new
-	webapp_src_preinst
-	perl Makefile.PL \
-		HTDOCS="${MY_HTDOCSDIR}" \
-		CGIBIN="${MY_HTDOCSDIR}"/cgi-bin \
-		CONF="${MY_HTDOCSDIR}"/etc/gbrowse \
-		PACKAGE_DIR="${D}" \
-		INSTALLDIRS=vendor \
-		GBROWSE_ROOT="gbrowse" \
-		DESTDIR="${D}" \
-		DATABASES="/var/www/gbrowse2/databases/" \
-		TMP="/var/tmp/gbrowse2" \
-		INSTALLETC="n" \
-		INSTALLCONF="n" \
-		WWWUSER="apache" \
-		DO_XS=1 \
-		NONROOT=1 \
-		|| die
-
-	#sed -i 's#DBI:SQLite:#DBI:SQLite:'${D}'#' "${S}"/install_util/GBrowseInstall.pm || die
-	#sed -i 's#DBI:SQLite:#DBI:SQLite:'${D}'#' "${S}"/conf/GBrowse.conf || die
-	#sed -i 's#/var/www/gbrowse2/databases/#'${D}'/var/www/gbrowse2/databases/#' "${S}"/_build/build_params
-	#sed -i 's#/var/www/gbrowse2/databases/#'${D}'/var/www/gbrowse2/databases/#' "${S}"/_build/config_data
-	#sed -i 's#/var/www/gbrowse2/databases/#'${D}'/var/www/gbrowse2/databases/#' "${S}"/_build/runtime_params
-}
-
-src_install() {
-	mydoc="Changes README TODO INSTALL"
-	perl-module_src_install
-
-	# TODO: write our own readme
-	webapp_src_preinst
-	webapp_postinst_txt en "${S}"/INSTALL || die
-	webapp_src_install
-
-	# should create a /etc/init.d/ startup script based on this
-	# /var/tmp/portage/sci-biology/gbrowse-2.03/work/GBrowse-2.03/etc/init.d/gbrowse-slave
-
-	# pre-create the directory so we can force its owner later on
-	mkdir -p "${D}"/var/www/gbrowse2/databases || die
-	chown -R apache.apache "${D}"/var/www/gbrowse2/databases || die
-	mkdir -p "${D}"/var/www/localhost/htdocs/gbrowse || die
-
-	ln -s "${D}"/var/tmp/gbrowse2/images "${D}"/var/www/localhost/htdocs/gbrowse/i || die
-
-	einfo "Probably you want to install a cron job to remove the generated temporary images:"
-	einfo "find /var/tmp/gbrowse2/images -type f -atime +20 -print -exec rm {}"
-
-	einfo "Make sure you compiled apache with +cgi and copy ${FILESDIR}/gbrowse.conf.vhosts.d to /etc/apache2/vhosts.d/"
-
-	sed -i "s#"${D}"##g" "${S}"/install_util/GBrowseInstall.pm || die
-	sed -i "s#"${D}"##" "${S}"/blib/conf/GBrowse.conf*
-	sed -i 's#DBI:SQLite:'${D}'/var/www/gbrowse2/databases/#DBI:SQLite:/var/www/gbrowse2/databases/#' "${S}"/install_util/GBrowseInstall.pm || die
-}
-
-pkg_postinst() {
-	webapp_pkg_postinst || die "webapp_pkg_postinst failed"
-
-	einfo "Please run gbrowse_metadb_config.pl to upate SQlite flatfiles or the live database"
-	einfo "This was disabled by "${FILESDIR}"/GBrowseInstall.pm-disable-gbrowse_metadb_config.pl.pm.patch"
-}
-
-src_test() {
-	mysql -uroot -p password -e 'create database yeast'
-	mysql -uroot -p password -e 'grant all privileges on yeast.* to gbrowse@localhost'
-	mysql -uroot -p password -e 'grant file on *.* to gbrowse@localhost'
-	mysql -uroot -p password -e 'grant select on yeast.* to nobody@localhost'
-
-	cd /usr/portage/distfiles || die
-	gzip -d yeast.fasta.gz || die
-	gzip -d yeast.gff.gz || die
-	#gzip -d fly.fasta.gz
-	#gzip -d fly.gff.gz
-	bp_bulk_load_gff.pl -d yeast -fasta yeast.fasta yeast.gff || die
-}
diff --git a/sci-biology/gbrowse/gbrowse-2.33.ebuild b/sci-biology/gbrowse/gbrowse-2.38.ebuild
index 9cc3ce479..9cc3ce479 100644
--- a/sci-biology/gbrowse/gbrowse-2.33.ebuild
+++ b/sci-biology/gbrowse/gbrowse-2.38.ebuild