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| author |   Michael Mair-Keimberger (asterix) <m.mairkeimberger@gmail.com> | 2017-01-29 09:44:12 +0100 |
|---|---|---|
| committer |   David Seifert <soap@gentoo.org> | 2017-01-29 21:09:14 +0100 |
| commit | 141b4f1e62b2f729dd0d7c27bdee231458ba3704 (patch) | |
| tree | 17744cc127150b5e9fda35254545cc978897265d /sci-biology/psipred | |
| parent | sci-biology/primer3: remove unused patch (diff) | |
| download | gentoo-141b4f1e62b2f729dd0d7c27bdee231458ba3704.tar.gz gentoo-141b4f1e62b2f729dd0d7c27bdee231458ba3704.tar.bz2 gentoo-141b4f1e62b2f729dd0d7c27bdee231458ba3704.zip | |
sci-biology/psipred: remove unused patches
Closes: https://github.com/gentoo/gentoo/pull/3708
Diffstat (limited to 'sci-biology/psipred')
| -rw-r--r-- | sci-biology/psipred/files/2.6.1-Makefile.patch | 42 | ||||
| -rw-r--r-- | sci-biology/psipred/files/2.6.1-path.patch | 34 | ||||
| -rw-r--r-- | sci-biology/psipred/files/3.0-path.patch | 38 |
3 files changed, 0 insertions, 114 deletions
diff --git a/sci-biology/psipred/files/2.6.1-Makefile.patch b/sci-biology/psipred/files/2.6.1-Makefile.patch deleted file mode 100644 index 0a6df743ec83..000000000000 --- a/sci-biology/psipred/files/2.6.1-Makefile.patch +++ /dev/null @@ -1,42 +0,0 @@ ---- src/Makefile 2008-03-09 22:59:51.000000000 +0100 -+++ src/Makefile.new 2009-04-09 12:31:38.669457918 +0200 -@@ -6,9 +6,7 @@ - #### CFLAGS Flags to pass to C compiler. - - INCDIR = . --CC = cc - --CFLAGS = -O - LIBS = -lm - - all: psipred psipass2 seq2mtx pfilt -@@ -20,13 +18,13 @@ - /bin/rm -f psipred psipass2 seq2mtx pfilt - - psipred: sspred_avpred.c ssdefs.h sspred_net.h -- $(CC) $(CFLAGS) sspred_avpred.c $(LIBS) -o psipred -+ $(CC) $(CFLAGS) $(LDFLAGS) sspred_avpred.c $(LIBS) -o psipred - - psipass2: sspred_hmulti.c ssdefs.h sspred_net2.h -- $(CC) $(CFLAGS) sspred_hmulti.c $(LIBS) -o psipass2 -+ $(CC) $(CFLAGS) $(LDFLAGS) sspred_hmulti.c $(LIBS) -o psipass2 - - seq2mtx: seq2mtx.c -- $(CC) $(CFLAGS) seq2mtx.c $(LIBS) -o seq2mtx -+ $(CC) $(CFLAGS) $(LDFLAGS) seq2mtx.c $(LIBS) -o seq2mtx - - pfilt: pfilt.c -- $(CC) $(CFLAGS) pfilt.c $(LIBS) -o pfilt -+ $(CC) $(CFLAGS) $(LDFLAGS) pfilt.c $(LIBS) -o pfilt ---- src/Makefile 2009-04-09 12:34:41.636939862 +0200 -+++ src/Makefile.new 2009-04-09 12:36:03.796098341 +0200 -@@ -12,7 +12,8 @@ - all: psipred psipass2 seq2mtx pfilt - - install: -- /bin/cp psipred psipass2 seq2mtx pfilt ../bin -+ /bin/mkdir -p $(DESTDIR)/usr/bin -+ /bin/cp psipred psipass2 seq2mtx pfilt $(DESTDIR)/usr/bin - - clean: - /bin/rm -f psipred psipass2 seq2mtx pfilt diff --git a/sci-biology/psipred/files/2.6.1-path.patch b/sci-biology/psipred/files/2.6.1-path.patch deleted file mode 100644 index 9b8d6b9fecfa..000000000000 --- a/sci-biology/psipred/files/2.6.1-path.patch +++ /dev/null @@ -1,34 +0,0 @@ ---- runpsipred 2008-04-05 00:14:36.000000000 +0200 -+++ runpsipred.new 2009-04-09 12:40:46.376203036 +0200 -@@ -14,13 +14,13 @@ - set dbname = nr - - # Where the NCBI programs have been installed --set ncbidir = /usr/local/bin -+set ncbidir = @GENTOO_PORTAGE_EPREFIX@/usr/bin - - # Where the PSIPRED V2 programs have been installed --set execdir = ./bin -+set execdir = @GENTOO_PORTAGE_EPREFIX@/usr/bin - - # Where the PSIPRED V2 data files have been installed --set datadir = ./data -+set datadir = @GENTOO_PORTAGE_EPREFIX@/usr/share/psipred/data - - set basename = $1:r - set rootname = $basename:t ---- runpsipred_single 2008-04-05 00:14:38.000000000 +0200 -+++ runpsipred_single.new 2009-04-09 12:41:10.086067082 +0200 -@@ -10,10 +10,10 @@ - # NOTE: Script modified to be more cluster friendly (DTJ April 2008) - - # Where the PSIPRED V2 programs have been installed --set execdir = ./bin -+set execdir = @GENTOO_PORTAGE_EPREFIX@/usr/bin - - # Where the PSIPRED V2 data files have been installed --set datadir = ./data -+set datadir = @GENTOO_PORTAGE_EPREFIX@/usr/share/psipred/data - - set basename = $1:r - set rootname = $basename:t diff --git a/sci-biology/psipred/files/3.0-path.patch b/sci-biology/psipred/files/3.0-path.patch deleted file mode 100644 index ebf9b2a61f4e..000000000000 --- a/sci-biology/psipred/files/3.0-path.patch +++ /dev/null @@ -1,38 +0,0 @@ -diff --git a/runpsipred b/runpsipred -index e133686..6ad57cc 100755 ---- a/runpsipred -+++ b/runpsipred -@@ -14,13 +14,13 @@ - set dbname = uniref90 - - # Where the NCBI programs have been installed --set ncbidir = /usr/local/bin -+set ncbidir = @GENTOO_PORTAGE_EPREFIX@/usr/bin - - # Where the PSIPRED V3 programs have been installed --set execdir = ./bin -+set execdir = @GENTOO_PORTAGE_EPREFIX@/usr/bin - - # Where the PSIPRED V3 data files have been installed --set datadir = ./data -+set datadir = @GENTOO_PORTAGE_EPREFIX@/usr/share/psipred/data - - set basename = $1:r - set rootname = $basename:t -diff --git a/runpsipred_single b/runpsipred_single -index 1f7680b..7bd5bc3 100755 ---- a/runpsipred_single -+++ b/runpsipred_single -@@ -10,10 +10,10 @@ - # NOTE: Script modified to be more cluster friendly (DTJ April 2008) - - # Where the PSIPRED V3 programs have been installed --set execdir = ./bin -+set execdir = @GENTOO_PORTAGE_EPREFIX@/usr/bin - - # Where the PSIPRED V3 data files have been installed --set datadir = ./data -+set datadir = @GENTOO_PORTAGE_EPREFIX@/usr/share/psipred/data - - set basename = $1:r - set rootname = $basename:t |