Globally add missing remote ID references to metadata.xml

Signed-off-by: Justin Lecher <jlec@gentoo.org>

7 files changed, 18 insertions, 9 deletions

diff --git a/sci-biology/abyss/metadata.xml b/sci-biology/abyss/metadata.xml
index c0c84f0ed07e..47116e507d89 100644
--- a/sci-biology/abyss/metadata.xml
+++ b/sci-biology/abyss/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer type="project">
@@ -10,6 +10,9 @@
     <name>Gentoo Haskell</name>
   </maintainer>
   <use>
-    <flag name='misc-haskell'>build abyss-samtobreak tool, pull in haskell toolchain</flag>
+    <flag name="misc-haskell">build abyss-samtobreak tool, pull in haskell toolchain</flag>
   </use>
+  <upstream>
+    <remote-id type="github">bcgsc/abyss</remote-id>
+  </upstream>
 </pkgmetadata>
diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml
index 2880d6633f84..1f3b075216dd 100644
--- a/sci-biology/cd-hit/metadata.xml
+++ b/sci-biology/cd-hit/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<maintainer type="project">
@@ -19,8 +19,9 @@ datasets and identifies the sequences in db2 that are similar to db1 above
 a threshold. CD-HIT-454 is a program to identify natural and artificial 
 duplicates from pyrosequencing reads. The usage of other programs and 
 scripts can be found in CD-HIT user's guide.
-</longdescription>
+	</longdescription>
 	<upstream>
 		<remote-id type="google-code">cdhit</remote-id>
+		<remote-id type="github">weizhongli/cdhit</remote-id>
 	</upstream>
 </pkgmetadata>
diff --git a/sci-biology/mosaik/metadata.xml b/sci-biology/mosaik/metadata.xml
index aa3be903a865..a3eca9b62b1c 100644
--- a/sci-biology/mosaik/metadata.xml
+++ b/sci-biology/mosaik/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer type="project">
@@ -7,5 +7,6 @@
   </maintainer>
   <upstream>
     <remote-id type="google-code">mosaik-aligner</remote-id>
+    <remote-id type="github">wanpinglee/MOSAIK</remote-id>
   </upstream>
 </pkgmetadata>
diff --git a/sci-biology/prodigal/metadata.xml b/sci-biology/prodigal/metadata.xml
index 4c106c240ed7..e086d08df6f7 100644
--- a/sci-biology/prodigal/metadata.xml
+++ b/sci-biology/prodigal/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
 	<maintainer type="project">
@@ -7,5 +7,6 @@
 	</maintainer>
 	<upstream>
 		<remote-id type="google-code">prodigal</remote-id>
+		<remote-id type="github">hyattpd/Prodigal</remote-id>
 	</upstream>
 </pkgmetadata>
diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml
index d0e3dcb50523..6182254bd46d 100644
--- a/sci-biology/pysam/metadata.xml
+++ b/sci-biology/pysam/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer type="project">
@@ -7,5 +7,6 @@
   </maintainer>
   <upstream>
     <remote-id type="google-code">pysam</remote-id>
+    <remote-id type="github">pysam-developers/pysam</remote-id>
   </upstream>
 </pkgmetadata>
diff --git a/sci-biology/samtools/metadata.xml b/sci-biology/samtools/metadata.xml
index 5b953af488ad..fe27db1184af 100644
--- a/sci-biology/samtools/metadata.xml
+++ b/sci-biology/samtools/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer type="project">
@@ -7,5 +7,6 @@
   </maintainer>
   <upstream>
     <remote-id type="sourceforge">samtools</remote-id>
+    <remote-id type="github">samtools/samtools</remote-id>
   </upstream>
 </pkgmetadata>
diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml
index 77f6f92e00ed..6c22d19200ae 100644
--- a/sci-biology/vcftools/metadata.xml
+++ b/sci-biology/vcftools/metadata.xml
@@ -1,4 +1,4 @@
-<?xml version="1.0" encoding="UTF-8"?>
+<?xml version='1.0' encoding='UTF-8'?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
   <maintainer type="project">
@@ -7,5 +7,6 @@
   </maintainer>
   <upstream>
     <remote-id type="sourceforge">vcftools</remote-id>
+    <remote-id type="github">vcftools/vcftools</remote-id>
   </upstream>
 </pkgmetadata>