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authorAaron Bauman <bman@gentoo.org>2020-07-03 22:22:37 -0400
committerAaron Bauman <bman@gentoo.org>2020-07-03 22:24:06 -0400
commit17ed872c6334185fdebf3d60b2aa219fc1fe7516 (patch)
tree12e8c60e602df8f5c29d00e701eab0a16ede9847 /sci-chemistry/modeller
parentmedia-plugins/kodi-pvr-nextpvr: 3.3.21 version bump (diff)
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*/*: drop last-rited py2 packages
Signed-off-by: Aaron Bauman <bman@gentoo.org>
Diffstat (limited to 'sci-chemistry/modeller')
-rw-r--r--sci-chemistry/modeller/Manifest2
-rw-r--r--sci-chemistry/modeller/metadata.xml8
-rw-r--r--sci-chemistry/modeller/modeller-9.20.ebuild145
-rw-r--r--sci-chemistry/modeller/modeller-9.22.ebuild145
4 files changed, 0 insertions, 300 deletions
diff --git a/sci-chemistry/modeller/Manifest b/sci-chemistry/modeller/Manifest
deleted file mode 100644
index 69e1780c97f5..000000000000
--- a/sci-chemistry/modeller/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST modeller-9.20.tar.gz 34909796 BLAKE2B d89c81823c4d7784a7b3d64fdb01158a973edc7d8b316c773e038ba8645797c543d5bc58c1bff5462ae5975a6c2796f4b2d500641d226c3b2281cf794cfeba8d SHA512 667edeeda0a9038258f6932b3cef22a1e9d0fe47f47bd2ac612e7bac7f23a863f5a65cfd93abfa405310e7fb7b305d53e71d6c6e930613b0dbd43b24dcd5919a
-DIST modeller-9.22.tar.gz 34953371 BLAKE2B 3bf8828b38f22955dea973cfe54cbd2f77bf021900bd5aa3c75f083b12e2a7199c3173de526acfeab005c0606816bac347b9bdfb6b62d5e3db9c9e18fed99ac4 SHA512 0056f09a07d6e2b565c8f4accca48ad176c9d32634b75bc4db60a187d56f22ef1710296dfd31bf27f496c5ed100146420be7cfdb135ca8b2b0fac7d7f5fa877f
diff --git a/sci-chemistry/modeller/metadata.xml b/sci-chemistry/modeller/metadata.xml
deleted file mode 100644
index da36ecbfcd6a..000000000000
--- a/sci-chemistry/modeller/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-chemistry@gentoo.org</email>
- <name>Gentoo Chemistry Project</name>
- </maintainer>
-</pkgmetadata>
diff --git a/sci-chemistry/modeller/modeller-9.20.ebuild b/sci-chemistry/modeller/modeller-9.20.ebuild
deleted file mode 100644
index 641395067b0d..000000000000
--- a/sci-chemistry/modeller/modeller-9.20.ebuild
+++ /dev/null
@@ -1,145 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 eutils multilib versionator
-
-DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
-HOMEPAGE="https://salilab.org/modeller/"
-SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz"
-
-LICENSE="modeller"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc examples"
-SLOT="0"
-
-RESTRICT="mirror"
-
-DEPEND=">=dev-lang/swig-1.3"
-RDEPEND=""
-
-INPATH="${EPREFIX}"/opt/modeller${ver}
-
-QA_PREBUILT="/opt/*"
-
-pkg_setup() {
- case ${ARCH} in
- x86)
- EXECTYPE="i386-intel8";;
- amd64)
- EXECTYPE="x86_64-intel8";;
- *)
- die "Your arch "${ARCH}" does not appear supported at this time.";;
- esac
-}
-
-python_prepare_all() {
- sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- cd src/swig || die
- swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
- distutils-r1_python_compile
-}
-
-python_install() {
- cd src/swig || die
- distutils-r1_python_install
-}
-
-python_install_all() {
- cd "${S}" || die
- sed \
- -e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
- -e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
- -i bin/modscript || die
-
- sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
- -e "s;@EXETYPE\@;${EXECTYPE};" \
- bin/modpy.sh.in > "${T}/modpy.sh"
-
- insinto ${INPATH}
- doins -r modlib
- python_foreach_impl python_domodule modlib/modeller
-
- insinto ${INPATH}/bin
- doins -r bin/{lib,*top}
-
- exeinto ${INPATH}/bin
- doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
-
- python_foreach_impl python_doscript bin/modslave.py
- dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
- dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
-
- exeinto ${INPATH}/lib/${EXECTYPE}/
- doexe lib/${EXECTYPE}/lib*
- dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
- dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.8 /usr/$(get_libdir)/libmodeller.so.8
-
- use doc && HTML_DOCS=( doc/. )
- distutils-r1_python_install_all
-
- if use examples; then
- insinto /usr/share/${PN}/
- doins -r examples
- fi
-
- insinto /etc/revdep-rebuild
- cat >> "${T}"/40-${PN} <<- EOF
- SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
- EOF
- doins "${T}"/40-${PN}
-}
-
-pkg_postinst() {
- if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
- echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
- fi
-
- if grep -q license ${INPATH}/modlib/modeller/config.py; then
- einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py"
- else
- ewarn "Obtain a license Key from"
- ewarn "http://salilab.org/modeller/registration.html"
- ewarn "And run this before using modeller:"
- ewarn "emerge --config =${CATEGORY}/${PF}"
- ewarn "That way you can [re]enter your license key."
- fi
-}
-
-pkg_postrm() {
- ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
- ewarn "that you need to remove to completely get rid of modeller."
-}
-
-pkg_config() {
- ewarn "Your license key is NOT checked for validity here."
- ewarn " Make sure you type it in correctly."
- eerror "If you CTRL+C out of this, modeller will not run!"
- while true
- do
- einfo "Please enter your license key:"
- read license_key1
- einfo "Please re-enter your license key:"
- read license_key2
- if [[ "$license_key1" == "" ]]
- then
- echo "You entered a blank license key. Try again."
- else
- if [[ "$license_key1" == "$license_key2" ]]
- then
- echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
- einfo "Thank you!"
- break
- else
- eerror "Your license key entries do not match. Try again."
- fi
- fi
- done
-}
diff --git a/sci-chemistry/modeller/modeller-9.22.ebuild b/sci-chemistry/modeller/modeller-9.22.ebuild
deleted file mode 100644
index 2bc08bd43d4e..000000000000
--- a/sci-chemistry/modeller/modeller-9.22.ebuild
+++ /dev/null
@@ -1,145 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit distutils-r1 eutils multilib
-
-DESCRIPTION="Homology or comparative modeling of protein three-dimensional structures"
-HOMEPAGE="https://salilab.org/modeller/"
-SRC_URI="https://salilab.org/${PN}/${PV}/${P}.tar.gz"
-
-LICENSE="modeller"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc examples"
-SLOT="0"
-
-RESTRICT="mirror"
-
-DEPEND=">=dev-lang/swig-1.3"
-RDEPEND=""
-
-INPATH="${EPREFIX}"/opt/modeller${ver}
-
-QA_PREBUILT="/opt/*"
-
-pkg_setup() {
- case ${ARCH} in
- x86)
- EXECTYPE="i386-intel8";;
- amd64)
- EXECTYPE="x86_64-intel8";;
- *)
- die "Your arch "${ARCH}" does not appear supported at this time.";;
- esac
-}
-
-python_prepare_all() {
- sed "s:i386-intel8:${EXECTYPE}:g" -i src/swig/setup.py || die
- distutils-r1_python_prepare_all
-}
-
-python_compile() {
- cd src/swig || die
- swig -python -keyword -nodefaultctor -nodefaultdtor -noproxy modeller.i || die
- distutils-r1_python_compile
-}
-
-python_install() {
- cd src/swig || die
- distutils-r1_python_install
-}
-
-python_install_all() {
- cd "${S}" || die
- sed \
- -e "/^EXECUTABLE_TYPE/s:xxx:${EXECTYPE}:g" \
- -e "/MODINSTALL/s:xxx:\"${INPATH}\":g" \
- -i bin/modscript || die
-
- sed -e "s;@TOPDIR\@;\"${INPATH}\";" \
- -e "s;@EXETYPE\@;${EXECTYPE};" \
- bin/modpy.sh.in > "${T}/modpy.sh"
-
- insinto ${INPATH}
- doins -r modlib
- python_foreach_impl python_domodule modlib/modeller
-
- insinto ${INPATH}/bin
- doins -r bin/{lib,*top}
-
- exeinto ${INPATH}/bin
- doexe bin/{modscript,mod${PV}_${EXECTYPE}} "${T}"/modpy.sh
-
- python_foreach_impl python_doscript bin/modslave.py
- dosym ${INPATH}/bin/modscript /opt/bin/mod${PV}
- dosym ${INPATH}/bin/modpy.sh /opt/bin/modpy.sh
-
- exeinto ${INPATH}/lib/${EXECTYPE}/
- doexe lib/${EXECTYPE}/lib*
- dosym libmodeller.so.8 ${INPATH}/lib/${EXECTYPE}/libmodeller.so
- dosym ../../${INPATH}/lib/${EXECTYPE}/libmodeller.so.8 /usr/$(get_libdir)/libmodeller.so.8
-
- use doc && HTML_DOCS=( doc/. )
- distutils-r1_python_install_all
-
- if use examples; then
- insinto /usr/share/${PN}/
- doins -r examples
- fi
-
- insinto /etc/revdep-rebuild
- cat >> "${T}"/40-${PN} <<- EOF
- SEARCH_DIRS_MASK="${EPREFIX}/opt/modeller/lib/"
- EOF
- doins "${T}"/40-${PN}
-}
-
-pkg_postinst() {
- if [[ ! -e "${INPATH}/modlib/modeller/config.py" ]]; then
- echo install_dir = \"${INPATH}/\"> ${INPATH}/modlib/modeller/config.py
- fi
-
- if grep -q license ${INPATH}/modlib/modeller/config.py; then
- einfo "A license key file is already present in ${IN_PATH}/modlib/modeller/config.py"
- else
- ewarn "Obtain a license Key from"
- ewarn "http://salilab.org/modeller/registration.html"
- ewarn "And run this before using modeller:"
- ewarn "emerge --config =${CATEGORY}/${PF}"
- ewarn "That way you can [re]enter your license key."
- fi
-}
-
-pkg_postrm() {
- ewarn "This package leaves a license Key file in ${INPATH}/modlib/modeller/config.py"
- ewarn "that you need to remove to completely get rid of modeller."
-}
-
-pkg_config() {
- ewarn "Your license key is NOT checked for validity here."
- ewarn " Make sure you type it in correctly."
- eerror "If you CTRL+C out of this, modeller will not run!"
- while true
- do
- einfo "Please enter your license key:"
- read license_key1
- einfo "Please re-enter your license key:"
- read license_key2
- if [[ "$license_key1" == "" ]]
- then
- echo "You entered a blank license key. Try again."
- else
- if [[ "$license_key1" == "$license_key2" ]]
- then
- echo license = '"'$license_key1'"' >> "${INPATH}/modlib/modeller/config.py"
- einfo "Thank you!"
- break
- else
- eerror "Your license key entries do not match. Try again."
- fi
- fi
- done
-}