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| author |   David Seifert <soap@gentoo.org> | 2022-12-27 01:06:43 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2022-12-27 01:06:43 +0100 |
| commit | 19c25897b24fd3699dc126bfb89af9d409ff0a71 (patch) | |
| tree | 4f1d8ac7aa06def35fecc46dfd177e8c2eec1e7e /sci-libs | |
| parent | x11-misc/gammastep: New package, fork of x11-misc/redshift (diff) | |
| download | gentoo-19c25897b24fd3699dc126bfb89af9d409ff0a71.tar.gz gentoo-19c25897b24fd3699dc126bfb89af9d409ff0a71.tar.bz2 gentoo-19c25897b24fd3699dc126bfb89af9d409ff0a71.zip | |
sci-libs/htslib: add 1.16
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-libs')
| -rw-r--r-- | sci-libs/htslib/Manifest | 1 | ||||
| -rw-r--r-- | sci-libs/htslib/htslib-1.16.ebuild | 52 |
2 files changed, 53 insertions, 0 deletions
diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest index f5b37a27ae5a..b8eaa4248e7d 100644 --- a/sci-libs/htslib/Manifest +++ b/sci-libs/htslib/Manifest @@ -1 +1,2 @@ DIST htslib-1.15.1.tar.bz2 4141140 BLAKE2B 312f67c8916586199b32b7703b43a9fd365b8af22802bf4d63fc40960c62b956915e7c60bbd777a8b179066608cd3a281929a10b60eef21d6eedb4caf8c147c1 SHA512 69d0c7f3ac50a9b9c579e9b3479b6745fc30d0ac838ff14695cf4e3da593854350e345ed1f4a496931ef57395f3416da4316903488f3e641f1e00fec544f3620 +DIST htslib-1.16.tar.bz2 4466776 BLAKE2B 4957dd7a25b3d0b939d4e924db018916a5f8a13a81e55ebd1ce1acc548986e581d017ead9a08245a4af1ebdcd15536f082425ebe05f16eb4faad27d332e48482 SHA512 9fa0b1f9bba50f889d4542825c9543fb3b34c13b4cc0e18940a66fafd130749574bfa2c2663d8b39f0b4ed2b298bf130367cda1b17b2929093d64b386730cbc5 diff --git a/sci-libs/htslib/htslib-1.16.ebuild b/sci-libs/htslib/htslib-1.16.ebuild new file mode 100644 index 000000000000..c4bd910685de --- /dev/null +++ b/sci-libs/htslib/htslib-1.16.ebuild @@ -0,0 +1,52 @@ +# Copyright 1999-2022 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=8 + +inherit toolchain-funcs + +DESCRIPTION="C library for high-throughput sequencing data formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" + +LICENSE="MIT" +SLOT="0/3" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="+bzip2 curl +lzma" + +RDEPEND=" + sys-libs/zlib + bzip2? ( app-arch/bzip2 ) + curl? ( net-misc/curl ) + lzma? ( app-arch/xz-utils )" +DEPEND="${RDEPEND}" + +src_prepare() { + default + + # upstream injects LDFLAGS into the .pc file, + # which is a big nono for QA + sed -e '/^\(static_l\|Libs.private\|Requires.private\)/d' \ + -i htslib.pc.in || die +} + +src_configure() { + econf \ + --disable-gcs \ + --disable-plugins \ + --disable-s3 \ + $(use_enable bzip2 bz2) \ + $(use_enable curl libcurl) \ + $(use_enable lzma) +} + +src_compile() { + emake AR="$(tc-getAR)" +} + +src_install() { + default + + # doesn't use libtool, can't disable static libraries + find "${ED}" -name '*.a' -delete || die +} |