diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bcftools/bcftools-1.9-r1.ebuild (renamed from sci-biology/bcftools/bcftools-1.9.ebuild) | 8 | ||||
| -rw-r--r-- | sci-biology/bcftools/files/bcftools-1.9-buildsystem.patch | 10 |
2 files changed, 14 insertions, 4 deletions
diff --git a/sci-biology/bcftools/bcftools-1.9.ebuild b/sci-biology/bcftools/bcftools-1.9-r1.ebuild index 53e47bc01a81..8141e6d22924 100644 --- a/sci-biology/bcftools/bcftools-1.9.ebuild +++ b/sci-biology/bcftools/bcftools-1.9-r1.ebuild @@ -1,9 +1,9 @@ -# Copyright 1999-2018 Gentoo Authors +# Copyright 1999-2020 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 -PYTHON_COMPAT=( python2_7 ) +PYTHON_COMPAT=( python3_6 ) inherit python-single-r1 @@ -14,18 +14,18 @@ SRC_URI="https://github.com/samtools/${PN}/releases/download/${PV}/${P}.tar.bz2" LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND=" dev-lang/perl + dev-python/matplotlib[${PYTHON_USEDEP}] =sci-libs/htslib-${PV}*:= sys-libs/zlib:= ${PYTHON_DEPS}" DEPEND="${RDEPEND}" PATCHES=( - "${FILESDIR}"/${PN}-1.5-buildsystem.patch + "${FILESDIR}"/${PN}-1.9-buildsystem.patch "${FILESDIR}"/${PN}-1.9-fix-shebangs.patch ) diff --git a/sci-biology/bcftools/files/bcftools-1.9-buildsystem.patch b/sci-biology/bcftools/files/bcftools-1.9-buildsystem.patch new file mode 100644 index 000000000000..a0df4b917bcb --- /dev/null +++ b/sci-biology/bcftools/files/bcftools-1.9-buildsystem.patch @@ -0,0 +1,10 @@ +--- a/Makefile ++++ b/Makefile +@@ -282,7 +282,6 @@ + $(INSTALL_PROGRAM) $(PROGRAMS) $(DESTDIR)$(bindir) + $(INSTALL_SCRIPT) $(MISC_SCRIPTS) $(DESTDIR)$(misc_bindir) + $(INSTALL_MAN) doc/bcftools.1 $(DESTDIR)$(man1dir) +- $(INSTALL_PROGRAM) plugins/*.so $(DESTDIR)$(plugindir) + + clean: testclean clean-plugins + -rm -f gmon.out *.o *~ $(PROGRAMS) version.h plugins/*.so plugins/*.P |