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# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python2_7 python3_{5,6} )
inherit distutils-r1
DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
HOMEPAGE="https://htseq.readthedocs.io/"
if [[ ${PV} == *9999 ]]; then
inherit git-r3
EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"
else
SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
KEYWORDS="~amd64"
fi
LICENSE="GPL-3+"
SLOT="0"
RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/matplotlib[${PYTHON_USEDEP}]
sci-biology/pysam[${PYTHON_USEDEP}]"
DEPEND="
${RDEPEND}
>=dev-lang/swig-3.0.8
dev-python/cython[${PYTHON_USEDEP}]"
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