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# Copyright 1999-2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=5
inherit eutils prefix toolchain-funcs versionator
#MY_P="${PN}$(delete_all_version_separators)"
MY_P="${PN}${PV}"
DESCRIPTION="Protein Secondary Structure Prediction"
HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
SRC_URI="
http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz
test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )"
LICENSE="psipred"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="test"
RESTRICT="!test? ( test )"
RDEPEND="
app-shells/tcsh
sci-biology/ncbi-tools
sci-biology/update-blastdb"
DEPEND=""
S="${WORKDIR}"/${PN}
src_prepare() {
rm -f bin/*
epatch \
"${FILESDIR}"/3.1-Makefile.patch \
"${FILESDIR}"/3.1-path.patch \
"${FILESDIR}"/3.2-fgets.patch
eprefixify runpsipred*
emake -C src clean
}
src_compile() {
emake -C src CC=$(tc-getCC)
}
src_install() {
emake -C src DESTDIR="${D}" install
dobin runpsipred* bin/* BLAST+/runpsipred*
insinto /usr/share/${PN}
doins -r data
dodoc README
}
pkg_postinst() {
elog "Please use the update_blastdb.pl in order to"
elog "maintain your own local blastdb"
}
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