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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit toolchain-funcs
DESCRIPTION="C library for high-throughput sequencing data formats"
HOMEPAGE="http://www.htslib.org/"
SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
LICENSE="MIT"
SLOT="0/3"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="+bzip2 curl +lzma"
RDEPEND="
sys-libs/zlib
bzip2? ( app-arch/bzip2 )
curl? ( net-misc/curl )
lzma? ( app-arch/xz-utils )"
DEPEND="${RDEPEND}"
src_prepare() {
default
# upstream injects LDFLAGS into the .pc file,
# which is a big nono for QA
sed -e '/^\(static_l\|Libs.private\|Requires.private\)/d' \
-i htslib.pc.in || die
}
src_configure() {
econf \
--disable-gcs \
--disable-plugins \
--disable-s3 \
$(use_enable bzip2 bz2) \
$(use_enable curl libcurl) \
$(use_enable lzma)
}
src_compile() {
emake AR="$(tc-getAR)"
}
src_install() {
default
# doesn't use libtool, can't disable static libraries
find "${ED}" -name '*.a' -delete || die
}
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