Version bump

Package-Manager: portage-2.2_rc86/cvs/Linux x86_64

4 files changed, 66 insertions, 7 deletions

diff --git a/sci-biology/bfast/ChangeLog b/sci-biology/bfast/ChangeLog
index 992cbbd3d743..c722f8bae228 100644
--- a/sci-biology/bfast/ChangeLog
+++ b/sci-biology/bfast/ChangeLog
@@ -1,6 +1,18 @@
 # ChangeLog for sci-biology/bfast
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.3 2010/05/07 19:21:57 weaver Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.4 2011/05/18 16:11:49 weaver Exp $
+
+*bfast-0.6.5a (18 May 2011)
+
+  18 May 2011; Andrey Kislyuk <weaver@gentoo.org> -bfast-0.6.4b.ebuild,
+  +bfast-0.6.4d.ebuild, +bfast-0.6.5a.ebuild:
+  Version bump
+
+*bfast-0.6.4d (11 Jul 2010)
+
+  11 Jul 2010; Andrey Kislyuk <weaver@gentoo.org> -bfast-0.6.4b.ebuild,
+  +bfast-0.6.4d.ebuild:
+  Version bump
 
 *bfast-0.6.4c (07 May 2010)
 
diff --git a/sci-biology/bfast/Manifest b/sci-biology/bfast/Manifest
index 156c32a2b199..9ef2109ffd74 100644
--- a/sci-biology/bfast/Manifest
+++ b/sci-biology/bfast/Manifest
@@ -1,6 +1,18 @@
-DIST bfast-0.6.4b.tar.gz 2459578 RMD160 bb2ac55082be519bce9d240cea643be9ba96c920 SHA1 3b51f0b29ad86797e2cf1ea4cb9f93809a80c575 SHA256 0b6c79826261b2e5353f115d96dcd338c9f22926fd4a9c107012dba466b1f096
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 DIST bfast-0.6.4c.tar.gz 2458820 RMD160 3a748167705318fc25c24679856eefa36f3d2c7e SHA1 3e81e8ea86532311468e9ae8684ab1fdb69c2b82 SHA256 c77548cb4508d026003b0fd7a7a5a86307b061a28c3871cc8cfaf3bf47d4c625
-EBUILD bfast-0.6.4b.ebuild 788 RMD160 5c6ec30efb0ccfabffee82d2a8df02f6950c8a0a SHA1 76a04c08e581b977560f5152ac536de4306aabfa SHA256 bfb73937d3806bb280d05bea77e1c28fe9a6fe0c5418624bca14e02a84528ab3
+DIST bfast-0.6.4d.tar.gz 2456535 RMD160 e2cd2ac2fda22b9d82e6f135192b06d6ed3a2499 SHA1 f103f5a1bdb3636c8d0b1daeef54ca7b836426a6 SHA256 56157874b53acb88aa64ea8fd149ee358513c00deaab853747ca321c0f55f059
+DIST bfast-0.6.5a.tar.gz 2456833 RMD160 05d06932e6dab6d627dceb0a8a72ad8055af14b9 SHA1 021b7ee8c12e88574ae6e943690a06237169c16e SHA256 5dbcb6216f45097a21abaa5c8bbbc6f5206f3b6263f43b2f1bb719604e76629b
 EBUILD bfast-0.6.4c.ebuild 788 RMD160 b9cda7aecb88b744d7d22767664732e0f701d31f SHA1 69f50db5dad1aa40ff47f23233888fc761180bcf SHA256 03e3755e38b559d6bcfc2ab08097974d27e21e84ccf7b78165cb9f5099ea18a1
-MISC ChangeLog 620 RMD160 965aebda267c26af56ebdba5fc6ab748aed0a1be SHA1 0d0df0271679660e8d401e7f12d3f6564f7aac27 SHA256 d9afd99ff410a4c60cf3a527ffdec1c8e215b4a17d6d0cf07b8cbd80f388a82b
+EBUILD bfast-0.6.4d.ebuild 788 RMD160 453ca12887ee04589a859e6d42d9e80753de3fe7 SHA1 94cb474f131ae59433705e075c65b82542f4685c SHA256 21bf5af65a28a48735166f11e082f04e96beba09a7c9539e5b675034c87baac9
+EBUILD bfast-0.6.5a.ebuild 788 RMD160 86525854802645725414c642b37ebe857f4f1233 SHA1 7a7e3aab31fa079a1384c04d3528a243bee4e80d SHA256 88011bcea99f58c35d39785b551f76bff8d47d26fdb3c5758610bb1911a5ab0b
+MISC ChangeLog 924 RMD160 39a890c0c987d7a34776db65f2530de3c461c237 SHA1 355b072aa5afd0b4f95b5ca57b0e12b9d8de0876 SHA256 f4222ef5627a701f392ea49fdf3afa4a34b6f908845a1ec332ec7feb20514119
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v1.4.11 (GNU/Linux)
+
+iEYEARECAAYFAk3T78oACgkQivr80kKBilJDJACfSrSnzQrHECPimOficRNpF38Y
+YeAAn1ukc/7p2KXbQPqvDDFrNoplJIFX
+=omgc
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/bfast/bfast-0.6.4b.ebuild b/sci-biology/bfast/bfast-0.6.4d.ebuild
index ee98c04b74b9..5bfbf5854c67 100644
--- a/sci-biology/bfast/bfast-0.6.4b.ebuild
+++ b/sci-biology/bfast/bfast-0.6.4d.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.4b.ebuild,v 1.1 2010/04/18 23:41:06 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.4d.ebuild,v 1.1 2011/05/18 16:11:49 weaver Exp $
 
 EAPI="2"
 
diff --git a/sci-biology/bfast/bfast-0.6.5a.ebuild b/sci-biology/bfast/bfast-0.6.5a.ebuild
new file mode 100644
index 000000000000..c086febcb233
--- /dev/null
+++ b/sci-biology/bfast/bfast-0.6.5a.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a.ebuild,v 1.1 2011/05/18 16:11:49 weaver Exp $
+
+EAPI="2"
+
+inherit autotools
+
+DESCRIPTION="Blat-like Fast Accurate Search Tool"
+HOMEPAGE="https://sourceforge.net/projects/bfast/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="dev-perl/XML-Simple"
+
+src_prepare() {
+	sed -i -e 's/-m64//' \
+		-e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
+		configure.ac || die
+	eautoreconf
+}
+
+src_install() {
+	einstall || die
+	dodoc AUTHORS NEWS README
+}
+
+src_test() {
+	emake check || die
+}