Fixed wrongs SRC_URI and HOMEPAGE (see bug #195080). Also bumped to new version.

Package-Manager: portage-2.1.3.12

5 files changed, 60 insertions, 14 deletions

diff --git a/sci-biology/mafft/ChangeLog b/sci-biology/mafft/ChangeLog
index a39710e12af1..9685d6731076 100644
--- a/sci-biology/mafft/ChangeLog
+++ b/sci-biology/mafft/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/mafft
-# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.2 2006/11/09 14:52:49 dberkholz Exp $
+# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.3 2007/10/10 10:23:40 markusle Exp $
+
+  08 Oct 2007; Markus Dittrich <markusle@gentoo.org> mafft-5.861-r1.ebuild, +mafft-6.240.ebuild:
+  Fixed wrongs SRC_URI and HOMEPAGE (see bug #195080). Also bumped
+  package to the most recent version.
 
 *mafft-5.861-r1 (09 Nov 2006)
 
diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest
index 113a14c3ea47..551ff80cf279 100644
--- a/sci-biology/mafft/Manifest
+++ b/sci-biology/mafft/Manifest
@@ -1,12 +1,17 @@
 DIST mafft-5.861-src.tgz 294337 RMD160 120130662e7353f8f310911a5b52657520ffe5cf SHA1 f140a579ecf81474ff5205a651155050655baa40 SHA256 c76466406797bcf13e07a4d877ba2053d06585116a498775f03252aa9843c5d9
-EBUILD mafft-5.861-r1.ebuild 842 RMD160 e90ff6791e21e13af431902eff060ee3284841e8 SHA1 83d7a8a2f073c94b6b2dd84f95926dd97b3eef0d SHA256 727676a471262f60819cf4697ded9009a6023106b773a90391675f5a5c1cd7bb
-MD5 14cefbd69989bfba4038d8c1ab177d00 mafft-5.861-r1.ebuild 842
-RMD160 e90ff6791e21e13af431902eff060ee3284841e8 mafft-5.861-r1.ebuild 842
-SHA256 727676a471262f60819cf4697ded9009a6023106b773a90391675f5a5c1cd7bb mafft-5.861-r1.ebuild 842
-MISC ChangeLog 639 RMD160 cdd45bacde8966d8cc5d6131b0866f136a63b0e6 SHA1 2c74dff1f01f8166704373c815425e7db111767c SHA256 8f640d8bb3a295cca8df6f7c39542064556c1515bc42e4c241828d8ecba62440
-MD5 b38c6eef1e405e7e71171f95d8e5932f ChangeLog 639
-RMD160 cdd45bacde8966d8cc5d6131b0866f136a63b0e6 ChangeLog 639
-SHA256 8f640d8bb3a295cca8df6f7c39542064556c1515bc42e4c241828d8ecba62440 ChangeLog 639
+DIST mafft-6.240-src.tgz 657197 RMD160 1cb77af7a5a6b9ab818560d9626e746fb7a3b839 SHA1 8fc05350d9dcf8a9f56bdeed20790a4e1f21ceba SHA256 d0183ab1d6a5e0d1132b95cb917fedb3b6dc16c38d3fde35d7140ecdca555e8f
+EBUILD mafft-5.861-r1.ebuild 813 RMD160 4ad40700b9653c26c43504bb13d3873808b9da0a SHA1 67b78cfd426ec592f2d6367ac0c74b1dbb41ad94 SHA256 1ffb35bae39162aceaf014208c40472848e134a7c3f1a9427ce7a7356145f84a
+MD5 1971dc147139aef883d8e652b890c9da mafft-5.861-r1.ebuild 813
+RMD160 4ad40700b9653c26c43504bb13d3873808b9da0a mafft-5.861-r1.ebuild 813
+SHA256 1ffb35bae39162aceaf014208c40472848e134a7c3f1a9427ce7a7356145f84a mafft-5.861-r1.ebuild 813
+EBUILD mafft-6.240.ebuild 810 RMD160 a290ee8a6bb6073f7d2b6eb170fd7b4286453422 SHA1 2878dfb65f12fc26c187f898cce2614aaf9b14ab SHA256 9cacd12019070ef67c3ac1309628567ffa0bd2a39c814cd76a9926ed48cfdc19
+MD5 34876df48f035361953868063701309a mafft-6.240.ebuild 810
+RMD160 a290ee8a6bb6073f7d2b6eb170fd7b4286453422 mafft-6.240.ebuild 810
+SHA256 9cacd12019070ef67c3ac1309628567ffa0bd2a39c814cd76a9926ed48cfdc19 mafft-6.240.ebuild 810
+MISC ChangeLog 841 RMD160 1cd7ef6efb285fab112f36b858d1e5f9ee948a18 SHA1 944e55a3a894a12a29baa8608058cb1e1bcd6ef3 SHA256 7b4b10bea5ff66160708296440283b92d5e3ddb62075eacfd0731b803c187ac3
+MD5 808ba2a231578bc2fad6802cb850113c ChangeLog 841
+RMD160 1cd7ef6efb285fab112f36b858d1e5f9ee948a18 ChangeLog 841
+SHA256 7b4b10bea5ff66160708296440283b92d5e3ddb62075eacfd0731b803c187ac3 ChangeLog 841
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
 MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
@@ -14,3 +19,6 @@ SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata
 MD5 28084e84b316686364a0cb65cd3d4ccd files/digest-mafft-5.861-r1 238
 RMD160 bcd6dac755d56b2249729fd0416aa47161a2795c files/digest-mafft-5.861-r1 238
 SHA256 670acf7b68f6a75a05585012bafbce04b52bddcef5e80aa9ca3ed7ef63d5b1ad files/digest-mafft-5.861-r1 238
+MD5 5ae0892b3b3bffb7aaf41b3b890ff24a files/digest-mafft-6.240 238
+RMD160 ea515ceec1eb03be39a15c0f14ac1a2f655697ad files/digest-mafft-6.240 238
+SHA256 f1e9910e18b44f8648b0f8606e4b2936326c500dc93e278c98832fd893dc651d files/digest-mafft-6.240 238
diff --git a/sci-biology/mafft/files/digest-mafft-6.240 b/sci-biology/mafft/files/digest-mafft-6.240
new file mode 100644
index 000000000000..945dc6042d8b
--- /dev/null
+++ b/sci-biology/mafft/files/digest-mafft-6.240
@@ -0,0 +1,3 @@
+MD5 e603c1dbef35913d46286d5b98b601a3 mafft-6.240-src.tgz 657197
+RMD160 1cb77af7a5a6b9ab818560d9626e746fb7a3b839 mafft-6.240-src.tgz 657197
+SHA256 d0183ab1d6a5e0d1132b95cb917fedb3b6dc16c38d3fde35d7140ecdca555e8f mafft-6.240-src.tgz 657197
diff --git a/sci-biology/mafft/mafft-5.861-r1.ebuild b/sci-biology/mafft/mafft-5.861-r1.ebuild
index 83312f64057b..fdf6396c96cb 100644
--- a/sci-biology/mafft/mafft-5.861-r1.ebuild
+++ b/sci-biology/mafft/mafft-5.861-r1.ebuild
@@ -1,12 +1,12 @@
-# Copyright 1999-2006 Gentoo Foundation
+# Copyright 1999-2007 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-5.861-r1.ebuild,v 1.1 2006/11/09 14:52:49 dberkholz Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-5.861-r1.ebuild,v 1.2 2007/10/10 10:23:40 markusle Exp $
 
 inherit toolchain-funcs multilib
 
 DESCRIPTION="Multiple sequence alignments using a variety of algorithms"
-HOMEPAGE="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/"
-SRC_URI="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/${P}-src.tgz"
+HOMEPAGE="http://align.bmr.kyushu-u.ac.jp/mafft/software/"
+SRC_URI="http://align.bmr.kyushu-u.ac.jp/mafft/software/${P}-src.tgz"
 LICENSE="free-noncomm"
 SLOT="0"
 KEYWORDS="~x86"
diff --git a/sci-biology/mafft/mafft-6.240.ebuild b/sci-biology/mafft/mafft-6.240.ebuild
new file mode 100644
index 000000000000..ed0f76d02d47
--- /dev/null
+++ b/sci-biology/mafft/mafft-6.240.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-6.240.ebuild,v 1.1 2007/10/10 10:23:40 markusle Exp $
+
+inherit toolchain-funcs multilib
+
+DESCRIPTION="Multiple sequence alignments using a variety of algorithms"
+HOMEPAGE="http://align.bmr.kyushu-u.ac.jp/mafft/software/"
+SRC_URI="http://align.bmr.kyushu-u.ac.jp/mafft/software/${P}-src.tgz"
+LICENSE="free-noncomm"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+RDEPEND=""
+DEPEND="${RDEPEND}"
+
+src_compile() {
+	cd src
+	emake \
+		PREFIX="/usr/$(get_libdir)/${PN}" \
+		CC="$(tc-getCC)" \
+		CFLAG="${CFLAGS}" \
+		|| die "make failed"
+}
+
+src_install() {
+	pushd src
+	emake PREFIX="${D}usr/$(get_libdir)/${PN}" install || die "install failed"
+	popd
+	dodoc readme
+}