(#154545) Install to correct locations and set PREFIX so it finds the binaries automatically.

Package-Manager: portage-2.1.2_rc1-r5

3 files changed, 11 insertions, 43 deletions

diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest
index 17f186cb7b73..113a14c3ea47 100644
--- a/sci-biology/mafft/Manifest
+++ b/sci-biology/mafft/Manifest
@@ -1,16 +1,16 @@
 DIST mafft-5.861-src.tgz 294337 RMD160 120130662e7353f8f310911a5b52657520ffe5cf SHA1 f140a579ecf81474ff5205a651155050655baa40 SHA256 c76466406797bcf13e07a4d877ba2053d06585116a498775f03252aa9843c5d9
-EBUILD mafft-5.861.ebuild 745 RMD160 5047b21be44364121a7b2b7bad036b8e754660a3 SHA1 48906922904bfdc6d7ba9e1a8390445cbfc61403 SHA256 1b034ffc48c288f96d862385f6bbf2faef28d7c51062e817aecacd08b16cc630
-MD5 eec24fbe87d354b6417a35a5229f19cc mafft-5.861.ebuild 745
-RMD160 5047b21be44364121a7b2b7bad036b8e754660a3 mafft-5.861.ebuild 745
-SHA256 1b034ffc48c288f96d862385f6bbf2faef28d7c51062e817aecacd08b16cc630 mafft-5.861.ebuild 745
-MISC ChangeLog 407 RMD160 37303d8589a7c8336875e2d8ed50161e92629dce SHA1 d329b833cdc7531dac0aa9feaa20da059a7244a3 SHA256 601c32fc1b7c816fdc92e11071862a6c10db44d0de17661b54ce8a613b8bb3c9
-MD5 48da3cbb9fc757434738b3db482b0dd0 ChangeLog 407
-RMD160 37303d8589a7c8336875e2d8ed50161e92629dce ChangeLog 407
-SHA256 601c32fc1b7c816fdc92e11071862a6c10db44d0de17661b54ce8a613b8bb3c9 ChangeLog 407
+EBUILD mafft-5.861-r1.ebuild 842 RMD160 e90ff6791e21e13af431902eff060ee3284841e8 SHA1 83d7a8a2f073c94b6b2dd84f95926dd97b3eef0d SHA256 727676a471262f60819cf4697ded9009a6023106b773a90391675f5a5c1cd7bb
+MD5 14cefbd69989bfba4038d8c1ab177d00 mafft-5.861-r1.ebuild 842
+RMD160 e90ff6791e21e13af431902eff060ee3284841e8 mafft-5.861-r1.ebuild 842
+SHA256 727676a471262f60819cf4697ded9009a6023106b773a90391675f5a5c1cd7bb mafft-5.861-r1.ebuild 842
+MISC ChangeLog 639 RMD160 cdd45bacde8966d8cc5d6131b0866f136a63b0e6 SHA1 2c74dff1f01f8166704373c815425e7db111767c SHA256 8f640d8bb3a295cca8df6f7c39542064556c1515bc42e4c241828d8ecba62440
+MD5 b38c6eef1e405e7e71171f95d8e5932f ChangeLog 639
+RMD160 cdd45bacde8966d8cc5d6131b0866f136a63b0e6 ChangeLog 639
+SHA256 8f640d8bb3a295cca8df6f7c39542064556c1515bc42e4c241828d8ecba62440 ChangeLog 639
 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
 MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
 SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
-MD5 28084e84b316686364a0cb65cd3d4ccd files/digest-mafft-5.861 238
-RMD160 bcd6dac755d56b2249729fd0416aa47161a2795c files/digest-mafft-5.861 238
-SHA256 670acf7b68f6a75a05585012bafbce04b52bddcef5e80aa9ca3ed7ef63d5b1ad files/digest-mafft-5.861 238
+MD5 28084e84b316686364a0cb65cd3d4ccd files/digest-mafft-5.861-r1 238
+RMD160 bcd6dac755d56b2249729fd0416aa47161a2795c files/digest-mafft-5.861-r1 238
+SHA256 670acf7b68f6a75a05585012bafbce04b52bddcef5e80aa9ca3ed7ef63d5b1ad files/digest-mafft-5.861-r1 238
diff --git a/sci-biology/mafft/files/digest-mafft-5.861 b/sci-biology/mafft/files/digest-mafft-5.861
deleted file mode 100644
index 2b72d7eeaccf..000000000000
--- a/sci-biology/mafft/files/digest-mafft-5.861
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 49612721f7095be702cbbf6c6b495fc1 mafft-5.861-src.tgz 294337
-RMD160 120130662e7353f8f310911a5b52657520ffe5cf mafft-5.861-src.tgz 294337
-SHA256 c76466406797bcf13e07a4d877ba2053d06585116a498775f03252aa9843c5d9 mafft-5.861-src.tgz 294337
diff --git a/sci-biology/mafft/mafft-5.861.ebuild b/sci-biology/mafft/mafft-5.861.ebuild
deleted file mode 100644
index 447322cafaf4..000000000000
--- a/sci-biology/mafft/mafft-5.861.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-5.861.ebuild,v 1.1 2006/10/21 05:29:23 dberkholz Exp $
-
-inherit toolchain-funcs
-
-DESCRIPTION="Multiple sequence alignments using a variety of algorithms"
-HOMEPAGE="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/"
-SRC_URI="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/${P}-src.tgz"
-LICENSE="free-noncomm"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-RDEPEND=""
-DEPEND="${RDEPEND}"
-
-src_compile() {
-	cd src
-	emake \
-		CC="$(tc-getCC)" \
-		CFLAG="${CFLAGS}" \
-		|| die "make failed"
-}
-
-src_install() {
-	exeinto /usr/bin
-	doexe scripts/* binaries/*
-	dodoc readme
-}