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authorAndrey Kislyuk <weaver@gentoo.org>2010-03-11 20:49:57 +0000
committerAndrey Kislyuk <weaver@gentoo.org>2010-03-11 20:49:57 +0000
commitb45021c7491f0d8a663683d64c3a9abaa6a83e26 (patch)
tree367247f6595aff563474ad63cff8be38ffa9347d /sci-biology/ncbi-tools++
parentAutomated update of use.local.desc (diff)
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Enable --with-mt
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/ncbi-tools++')
-rw-r--r--sci-biology/ncbi-tools++/ChangeLog8
-rw-r--r--sci-biology/ncbi-tools++/Manifest14
-rw-r--r--sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r3.ebuild (renamed from sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r2.ebuild)8
3 files changed, 14 insertions, 16 deletions
diff --git a/sci-biology/ncbi-tools++/ChangeLog b/sci-biology/ncbi-tools++/ChangeLog
index 6cd573fff28d..3b5159c1448e 100644
--- a/sci-biology/ncbi-tools++/ChangeLog
+++ b/sci-biology/ncbi-tools++/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/ncbi-tools++
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.11 2010/03/07 09:19:05 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.12 2010/03/11 20:49:57 weaver Exp $
+
+*ncbi-tools++-2009.05.15-r3 (11 Mar 2010)
+
+ 11 Mar 2010; Andrey Kislyuk <weaver@gentoo.org>
+ -ncbi-tools++-2009.05.15-r2.ebuild, +ncbi-tools++-2009.05.15-r3.ebuild:
+ Enable --with-mt
07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org>
ncbi-tools++-2009.05.15-r2.ebuild:
diff --git a/sci-biology/ncbi-tools++/Manifest b/sci-biology/ncbi-tools++/Manifest
index 1d24040a605e..a6d6431404ce 100644
--- a/sci-biology/ncbi-tools++/Manifest
+++ b/sci-biology/ncbi-tools++/Manifest
@@ -1,15 +1,5 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
AUX ncbi-tools++-2009.05.15-gcc44.patch 554 RMD160 57a23cbaad59b6011124f684db55f4ac2e4a43ab SHA1 7ed63addba554bf87a347d25ea2d4ea6b6552a1a SHA256 ddc2379ff636851e1bb4fb601930ee926c396819e06812b1ba76da001255d5c6
DIST ncbi_cxx--May_15_2009.tar.gz 13986626 RMD160 131a04d43056fd4d4fd1781d38a5c1b9e3089a13 SHA1 0cecad93774ce40b3455149b2c3538dfce032b85 SHA256 ccb86f2e33251580e23c94b8d2a4aa4832c278171ded29513f0c9859b303f1d8
-EBUILD ncbi-tools++-2009.05.15-r2.ebuild 2623 RMD160 edf7c83b549e97c0fd33e9f27d95ec53ba0f5712 SHA1 3209b135cb6cc2e249b3e915eb750a45c4eec54b SHA256 fae656baaaeac39e25ed7ab5420e34ef1a4b7fd948ba7fa969abdeffdb0d416d
-MISC ChangeLog 2134 RMD160 f3171f61cfc2818c8a4499b050fdcdbced7a6804 SHA1 b3c79f632d36a37bed946d07f00a7388e47816cb SHA256 947d55e2da14d5ee61071ddcc3bcba930fd4dfdd6573af62f5e53a71851d4320
+EBUILD ncbi-tools++-2009.05.15-r3.ebuild 2692 RMD160 8b337c986551dc52d2cdfd6c630d87e4ddce72a3 SHA1 38caea9979ef082608b3c24ed173bda2276c0b4a SHA256 0751f47af667e46eccde2c7bfee91e0ee669d54c81b174eb602388031549ea73
+MISC ChangeLog 2323 RMD160 bb9a9d21b8b6be4a97d710fcf5c22d1d0b9afea9 SHA1 b14f35f112d64dbd726fb937122b85afb95bb2b7 SHA256 0142f981ac1a45fd8e5f8012f8bb01aeb6b28fe9f068c871c078ee8fbcb5c49c
MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.14 (GNU/Linux)
-
-iEYEARECAAYFAkuTb48ACgkQgAnW8HDreRZRcwCeLtGtKzBn7yqKELMPSehFTT0d
-ORkAoKdh6jnKY2am7M+xHCEZ1xetSW3r
-=QOsk
------END PGP SIGNATURE-----
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r2.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r3.ebuild
index 61c7a3b5ede1..3af93c792148 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r2.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r3.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r2.ebuild,v 1.2 2010/03/07 09:19:05 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2009.05.15-r3.ebuild,v 1.1 2010/03/11 20:49:57 weaver Exp $
EAPI="3"
@@ -52,6 +52,9 @@ src_prepare() {
}
src_configure() {
+ # required with gcc-4.4 and code turned on by --with-mt
+ export CPPFLAGS="${CPPFLAGS} -fpermissive"
+
# econf fails
# --with-bin-release and --without-ftds are workarounds for build system bugs
# NB: build system supports ICC
@@ -66,10 +69,9 @@ src_configure() {
--with-bz2="${EPREFIX}/usr" \
--with-pcre="${EPREFIX}/usr" \
--with-openssl="${EPREFIX}/usr" \
+ --with-mt \
|| die
-# --with-mt \ # fails with gcc-4.4 but not 4.3
-
# apparently gbench-only configs
# --with-boost="/usr" \
# --with-sablot="/usr" \