New upstream version. Removed old version.

Package-Manager: portage-2.1.1-r2

3 files changed, 12 insertions, 57 deletions

diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index d201897d04cc..38fa07c04c94 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,17 +1,17 @@
 DIST rebase-610.tar.bz2 183836 RMD160 f39b66acd481383f4b2dda932ad42d902bd23d34 SHA1 cd41f1e446139e0615179561b096b8f3ce5a9589 SHA256 f558655b399ab51cbfdf7bc3982025a7af66484528453360742bd45eac85b61d
-DIST rebase-611.tar.bz2 183868 RMD160 27681a60625b7dc753d0e98bd0c5ba8de4686fd1 SHA1 d6dd041c8666485b8a5f85c6faa759ccc25d8ba1 SHA256 71ed50d5f7699b1ce5a6534d0744c96ec342b6a074a5008843c3bb1df7ae9ea6
+DIST rebase-612.tar.bz2 183945 RMD160 bcfedf676553245836e111f4fbb38859439a8ee2 SHA1 05c4aff36d6b3fe141a6e877cfccf5db0570b163 SHA256 b075226311e6a367adf27f26bab05b21ff1cf459c6972d292a5ccd07bc0769fd
 EBUILD rebase-610.ebuild 1334 RMD160 4001cc3bdf6cf840ce5c1f3eb811d679e0ebd9ff SHA1 b50fdc5f54c7a34406deb2bf8661a331abdb317b SHA256 02d029f6a31ff99794a9e8fb3d886d67eab470696c891f3996d2754be6b9f067
 MD5 d940265171168a8cb72cda1fc34bc007 rebase-610.ebuild 1334
 RMD160 4001cc3bdf6cf840ce5c1f3eb811d679e0ebd9ff rebase-610.ebuild 1334
 SHA256 02d029f6a31ff99794a9e8fb3d886d67eab470696c891f3996d2754be6b9f067 rebase-610.ebuild 1334
-EBUILD rebase-611.ebuild 1341 RMD160 94ae5f7d14542ed75c08faecf59dbbdef449be22 SHA1 6f205bafc042617d13825e2fdfd14095bc804310 SHA256 317afe33dca8b331fefb22a12c33100a87a2e2533ce4a947d83cab10e2dd789e
-MD5 9e5a49402b79df6e439004c489c073c1 rebase-611.ebuild 1341
-RMD160 94ae5f7d14542ed75c08faecf59dbbdef449be22 rebase-611.ebuild 1341
-SHA256 317afe33dca8b331fefb22a12c33100a87a2e2533ce4a947d83cab10e2dd789e rebase-611.ebuild 1341
-MISC ChangeLog 10728 RMD160 fe525bb3b03f1a3828cff7e4c90a86db996f2921 SHA1 8e8743817ae24b235a007236a820587b75f60150 SHA256 2616bf831087f99a18f3149a6ff4dba8a86cd4ae0e427d49f9a5bf51cace3266
-MD5 4cd544af5d5da63d1500e41aefd46806 ChangeLog 10728
-RMD160 fe525bb3b03f1a3828cff7e4c90a86db996f2921 ChangeLog 10728
-SHA256 2616bf831087f99a18f3149a6ff4dba8a86cd4ae0e427d49f9a5bf51cace3266 ChangeLog 10728
+EBUILD rebase-612.ebuild 1341 RMD160 28064a1c1e00fea5ffe8f91d066d35ba822d429e SHA1 178f9fec154a9ddf4fdf4b98ea8af53d70214b2a SHA256 84604f03d2034da976beeb350f8efbc1534466ae25a4e99cecb2a86f2027a7c4
+MD5 75b3a002c069912f6dbe7f8f83b9662e rebase-612.ebuild 1341
+RMD160 28064a1c1e00fea5ffe8f91d066d35ba822d429e rebase-612.ebuild 1341
+SHA256 84604f03d2034da976beeb350f8efbc1534466ae25a4e99cecb2a86f2027a7c4 rebase-612.ebuild 1341
+MISC ChangeLog 10896 RMD160 b8a678af9f4446110b3be4dc6dc8bcffe42b84a8 SHA1 b5bcd1d0532b2da9fde95327c120f336c8332612 SHA256 7b78f3259eae8145a8ac0b6a8235357500f21e3ed8ebb5bd0e4392a8466ed1b4
+MD5 842586e843dbc1da943d6d28ca8b57ab ChangeLog 10896
+RMD160 b8a678af9f4446110b3be4dc6dc8bcffe42b84a8 ChangeLog 10896
+SHA256 7b78f3259eae8145a8ac0b6a8235357500f21e3ed8ebb5bd0e4392a8466ed1b4 ChangeLog 10896
 MISC metadata.xml 908 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 SHA1 32a6173a7ffa2900bb3ae75267684c3c4901ba1d SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af
 MD5 a463e92a7c6c7832dc446b533dd7b454 metadata.xml 908
 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 metadata.xml 908
@@ -19,6 +19,6 @@ SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af metadata
 MD5 ca6d69c55ad03cd0b89e2bf5e7d040eb files/digest-rebase-610 235
 RMD160 10a85678678b1d8118d79fa8e61ab84078e0cc51 files/digest-rebase-610 235
 SHA256 da565ac0115d50a835452a5c7faaf6184b7a7e7478a59bad9e21c115635905ab files/digest-rebase-610 235
-MD5 a1b3a1c631f7301cbaf3871035fb9e5c files/digest-rebase-611 235
-RMD160 6eaa7fe14c7fcb63da510777364e251c1eb724c1 files/digest-rebase-611 235
-SHA256 d1791cc0a85105b0c799eda85d7208433472b0f4669277e04ec955b2df00bc65 files/digest-rebase-611 235
+MD5 21a69a042124fd7f51b4d492db1d56d0 files/digest-rebase-612 235
+RMD160 f503f591ff434e7bcc8f51b322407b5a7d31981b files/digest-rebase-612 235
+SHA256 2e8beba49f4a22d0f4c70b3098505306a4f13ed85b314b1514ade96c8cebee1d files/digest-rebase-612 235
diff --git a/sci-biology/rebase/files/digest-rebase-611 b/sci-biology/rebase/files/digest-rebase-611
deleted file mode 100644
index 12ed27a3f074..000000000000
--- a/sci-biology/rebase/files/digest-rebase-611
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 f233fef712a5f9528155f16063840013 rebase-611.tar.bz2 183868
-RMD160 27681a60625b7dc753d0e98bd0c5ba8de4686fd1 rebase-611.tar.bz2 183868
-SHA256 71ed50d5f7699b1ce5a6534d0744c96ec342b6a074a5008843c3bb1df7ae9ea6 rebase-611.tar.bz2 183868
diff --git a/sci-biology/rebase/rebase-611.ebuild b/sci-biology/rebase/rebase-611.ebuild
deleted file mode 100644
index 9d9a4a9f4119..000000000000
--- a/sci-biology/rebase/rebase-611.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-611.ebuild,v 1.1 2006/11/03 00:20:40 ribosome Exp $
-
-DESCRIPTION="A restriction enzyme database"
-LICENSE="public-domain"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-SLOT="0"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
-
-DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
-			-protofile proto.${PV} || die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${PV} proto.${PV} || die \
-			"Failed to install raw database."
-	fi
-	newdoc REBASE.DOC README || die "Failed to install documentation."
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup} || die \
-			"Failed to install EMBOSS data files."
-		insinto /usr/share/EMBOSS/data
-		doins embossre.equ || die "Failed to install enzyme prototypes file."
-	fi
-}