New version

Package-Manager: portage-2.0.54

4 files changed, 52 insertions, 17 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 78e576e9339f..e0a7f9cf53da 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.58 2006/02/22 21:18:22 grobian Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.59 2006/03/15 14:34:54 ribosome Exp $
+
+*rebase-603 (15 Mar 2006)
+
+  15 Mar 2006; Olivier Fisette <ribosome@gentoo.org> +rebase-603.ebuild:
+  New version.
 
   22 Feb 2006; Fabian Groffen <grobian@gentoo.org> rebase-601-r1.ebuild:
   Marked ppc-macos stable (bug #123332)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index c7d28082daa6..6a15fb6a5ae0 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,24 +1,10 @@
 MD5 012c0d136bf544e7f0a630e24cb3a169 ChangeLog 8187
-RMD160 2ca25390e718a124a89dfe4db09b384b93391a82 ChangeLog 8187
-SHA256 bb35f6da576d86d08cdb0de933e53d69103b3ea71731f05b118f599e39117d4e ChangeLog 8187
 MD5 0327e485fe0040317dd1016583b0d76d files/digest-rebase-512 63
-RMD160 da0977a8bd82283fb9f713ada1bd99cf102261ce files/digest-rebase-512 63
-SHA256 13c140a92f51b0ea6c4901606fad7fb9f970680beee3904e9454132d699a90f7 files/digest-rebase-512 63
 MD5 9b37c587b84cf914d6f9a9b616c493db files/digest-rebase-601-r1 63
-RMD160 a3685b540b325e1e6f26caf1843a07476771dd59 files/digest-rebase-601-r1 63
-SHA256 d2c68d331d68ca3431d7f39ae76cea9c6972766b24d45c68fc6cbe617d0a36e2 files/digest-rebase-601-r1 63
 MD5 d652b16d7ec999abd36a1e222a7b0ca9 files/digest-rebase-602 63
-RMD160 b41adf63e5de4f2c66e32bf1d65ea0e9d2e2d736 files/digest-rebase-602 63
-SHA256 cb89e9c7f5bdf4438d4e35b0e5c6c3a1e42a8182607080b3116fcb977ef07610 files/digest-rebase-602 63
+MD5 5bd3ee69a92fe75245399d6d3ba20f42 files/digest-rebase-603 63
 MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
-RMD160 6124f8e0fba32951daaba2f52d7f6f0f00233b2d metadata.xml 900
-SHA256 e947dfc382096458c2183dc90fe7add203f8a6d86ccdfea668176451d58e2e7d metadata.xml 900
 MD5 292928f0068bac8ab37a29c223af581e rebase-512.ebuild 1238
-RMD160 4dc23297f81069f315445fb30e652878c0722a97 rebase-512.ebuild 1238
-SHA256 ffcf6a7746df03153fe059d7ae827c61d48954905ed27d9f6bde28e1ef32bb38 rebase-512.ebuild 1238
 MD5 0548120df1780978e8f3f0d6d45ed7a4 rebase-601-r1.ebuild 1358
-RMD160 5282654ca69342935bad8e46033887c4fca5ac74 rebase-601-r1.ebuild 1358
-SHA256 dae5a787f50988f7e291b37c0a677fdc73ae2864f9db2be88aa2a6f2e2a5a57d rebase-601-r1.ebuild 1358
 MD5 9383effacdb187a2360dbb1112eb3ba7 rebase-602.ebuild 1360
-RMD160 61a278486d31734cb0cd0b0faa0f9b096cce90c7 rebase-602.ebuild 1360
-SHA256 f088d3941d71b53f5c1493caf6c8d9907c31e7bc976436bf62af448379f6001e rebase-602.ebuild 1360
+MD5 9383effacdb187a2360dbb1112eb3ba7 rebase-603.ebuild 1360
diff --git a/sci-biology/rebase/files/digest-rebase-603 b/sci-biology/rebase/files/digest-rebase-603
new file mode 100644
index 000000000000..2079feb0b217
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-603
@@ -0,0 +1 @@
+MD5 2b207277228f7ee9b5f7231bac809ec2 rebase-603.tar.bz2 182746
diff --git a/sci-biology/rebase/rebase-603.ebuild b/sci-biology/rebase/rebase-603.ebuild
new file mode 100644
index 000000000000..013093440312
--- /dev/null
+++ b/sci-biology/rebase/rebase-603.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-603.ebuild,v 1.1 2006/03/15 14:34:54 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~x86 ~ppc ~amd64 ~ppc-macos ~ppc64"
+
+DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
+
+src_compile() {
+	if use emboss; then
+		echo
+		einfo "Indexing ${PN} for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
+			-protofile proto.${PV} || die "Indexing ${PN} failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+			"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/{embossre.enz,embossre.ref,embossre.sup} || die \
+			"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins embossre.equ || die "Failed to install enzyme prototypes file."
+	fi
+}