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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-10-02 20:04:57 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-10-02 20:04:57 +0000 |
| commit | 0e191e665fa8c3e243c5a09c8ced593431d7ecac (patch) | |
| tree | e8b6d37d4dd322bf60a46f91021ca3c7eb367c44 /sci-biology/vcftools | |
| parent | [net-wireless/madwimax] It works on ~arm (tm) (diff) | |
| download | historical-0e191e665fa8c3e243c5a09c8ced593431d7ecac.tar.gz historical-0e191e665fa8c3e243c5a09c8ced593431d7ecac.tar.bz2 historical-0e191e665fa8c3e243c5a09c8ced593431d7ecac.zip | |
New package, ebuild written by me
Package-Manager: portage-2.2.0_alpha45/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/vcftools')
| -rw-r--r-- | sci-biology/vcftools/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/vcftools/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/vcftools/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/vcftools/vcftools-0.1.6.ebuild | 32 |
4 files changed, 65 insertions, 0 deletions
diff --git a/sci-biology/vcftools/ChangeLog b/sci-biology/vcftools/ChangeLog new file mode 100644 index 000000000000..6f16022dd050 --- /dev/null +++ b/sci-biology/vcftools/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/vcftools +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.1 2011/10/02 20:04:57 weaver Exp $ + +*vcftools-0.1.6 (02 Oct 2011) + + 02 Oct 2011; Andrey Kislyuk <weaver@gentoo.org> +vcftools-0.1.6.ebuild, + +metadata.xml: + New package, ebuild written by me + diff --git a/sci-biology/vcftools/Manifest b/sci-biology/vcftools/Manifest new file mode 100644 index 000000000000..20c540fd8b06 --- /dev/null +++ b/sci-biology/vcftools/Manifest @@ -0,0 +1,14 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +DIST vcftools_0.1.6.tar.gz 465875 RMD160 bb45afcbfd8f5f95f4b579e0ccb874c1c8408c28 SHA1 1cdd18366e879205f194940a03d3984bb83ece8c SHA256 44a63d3ee089350f66abc3491ec0d18a959e815a816278ea93f2f424b3428077 +EBUILD vcftools-0.1.6.ebuild 774 RMD160 a186e9ec162b439c1f6c7b707eff8fc45638f75e SHA1 c9a120ae9ac3e0ac7bc6ffd22638437ecfab7ef0 SHA256 6fd12d91bc04c505f144d153397abe358f03c0abe1004923e9e4b21662981738 +MISC ChangeLog 372 RMD160 8db397f200b459e87813b5d8b78c67608ed708c2 SHA1 7be03106f3a62c633235fcad323f0af1a66cb19f SHA256 b7bb5aa0bb70a93aa2184943171dd78b4f20a6f3cc35b2a4ec124d7b1fdaa989 +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v1.4.11 (GNU/Linux) + +iEYEARECAAYFAk6Iw+8ACgkQ8xSwyhbn2OYPxgCgqgxY3PR8pWB0HmOO1AmC0Hah +lbsAnRjgqM4TS5KW64f+z2uN4Dl+0YBT +=hX2f +-----END PGP SIGNATURE----- diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/vcftools/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/vcftools/vcftools-0.1.6.ebuild b/sci-biology/vcftools/vcftools-0.1.6.ebuild new file mode 100644 index 000000000000..e8caa0fb35fc --- /dev/null +++ b/sci-biology/vcftools/vcftools-0.1.6.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/vcftools-0.1.6.ebuild,v 1.1 2011/10/02 20:04:57 weaver Exp $ + +EAPI=4 + +MY_P="${PN}_${PV}" + +DESCRIPTION="Tools for working with VCF (Variant Call Format) files" +HOMEPAGE="http://vcftools.sourceforge.net/" +SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + sed -i -e "s/CPPFLAGS =/CPPFLAGS = $CXXFLAGS /" \ + -e "s/LIB =/LIB = $LDFLAGS /" cpp/Makefile || die +} + +src_install(){ + dobin bin/* + insinto /usr/share/${PN}/perl + doins perl/*.pm + exeinto /usr/share/${PN}/perl + doexe perl/{fill,vcf}-* + dodoc README.txt +} |