New upstream packaging for EMBOSS 5.0.0.

Package-Manager: portage-2.1.2.9

10 files changed, 101 insertions, 3 deletions

diff --git a/sci-biology/embassy-domsearch/ChangeLog b/sci-biology/embassy-domsearch/ChangeLog
index 1e1664f3e350..777c0aa1d109 100644
--- a/sci-biology/embassy-domsearch/ChangeLog
+++ b/sci-biology/embassy-domsearch/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-domsearch
 # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.12 2007/02/15 20:13:36 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/ChangeLog,v 1.13 2007/07/18 01:38:29 ribosome Exp $
+
+*embassy-domsearch-0.1.0-r2 (18 Jul 2007)
+
+  18 Jul 2007; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-domsearch-0.1.0-r2.ebuild:
+  New upstream packaging for EMBOSS 5.0.0.
 
   15 Feb 2007; Jeff Gardner <je_fro@gentoo.org>
   embassy-domsearch-0.1.0-r1.ebuild:
diff --git a/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild
new file mode 100644
index 000000000000..266d0a193a33
--- /dev/null
+++ b/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-domsearch/embassy-domsearch-0.1.0-r2.ebuild,v 1.1 2007/07/18 01:38:29 ribosome Exp $
+
+EBOV="5.0.0"
+
+inherit embassy
+
+DESCRIPTION="Protein domain search add-on package for EMBOSS"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2 b/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2
new file mode 100644
index 000000000000..c557c311a5f8
--- /dev/null
+++ b/sci-biology/embassy-domsearch/files/digest-embassy-domsearch-0.1.0-r2
@@ -0,0 +1,6 @@
+MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
+RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
+SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
+MD5 778ab15bce09a6440fc6859b3a27157d embassy-5.0.0-domsearch-0.1.0.tar.gz 469776
+RMD160 3e6fcdb1b209280026099408be06502f91c1c1fa embassy-5.0.0-domsearch-0.1.0.tar.gz 469776
+SHA256 23e069161ec56df5eab5fc491ca3493c056cfee42f2e05f1b5ef258498792a87 embassy-5.0.0-domsearch-0.1.0.tar.gz 469776
diff --git a/sci-biology/embassy-esim4/ChangeLog b/sci-biology/embassy-esim4/ChangeLog
index f79886fb0444..37d2e3ae9fd6 100644
--- a/sci-biology/embassy-esim4/ChangeLog
+++ b/sci-biology/embassy-esim4/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-esim4
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.21 2007/02/16 21:44:25 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/ChangeLog,v 1.22 2007/07/18 01:35:55 ribosome Exp $
+
+*embassy-esim4-1.0.0-r4 (18 Jul 2007)
+
+  18 Jul 2007; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-esim4-1.0.0-r4.ebuild:
+  New upstream packaging for EMBOSS 5.0.0.
 
   16 Feb 2007; Jeff Gardner <je_fro@gentoo.org>
   embassy-esim4-1.0.0-r3.ebuild:
diff --git a/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild
new file mode 100644
index 000000000000..f014ee719abc
--- /dev/null
+++ b/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild
@@ -0,0 +1,13 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-esim4/embassy-esim4-1.0.0-r4.ebuild,v 1.1 2007/07/18 01:35:55 ribosome Exp $
+
+EBOV="5.0.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
diff --git a/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4 b/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4
new file mode 100644
index 000000000000..ab450b7e97db
--- /dev/null
+++ b/sci-biology/embassy-esim4/files/digest-embassy-esim4-1.0.0-r4
@@ -0,0 +1,6 @@
+MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
+RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
+SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
+MD5 ee65d0da0f2d75959f370b13f2218c1c embassy-5.0.0-esim4-1.0.0.tar.gz 431329
+RMD160 0197e53eec6e7813d94652152af87d9e20001c56 embassy-5.0.0-esim4-1.0.0.tar.gz 431329
+SHA256 eee1cc8fef40e19fab74b16f1c1cb0883a49561eb9fdc2075f428085c6722bda embassy-5.0.0-esim4-1.0.0.tar.gz 431329
diff --git a/sci-biology/embassy-hmmer/ChangeLog b/sci-biology/embassy-hmmer/ChangeLog
index 5a1858975983..93408b1433a3 100644
--- a/sci-biology/embassy-hmmer/ChangeLog
+++ b/sci-biology/embassy-hmmer/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/embassy-hmmer
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/ChangeLog,v 1.22 2007/02/15 19:55:38 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/ChangeLog,v 1.23 2007/07/18 01:40:24 ribosome Exp $
+
+*embassy-hmmer-2.3.2-r1 (18 Jul 2007)
+
+  18 Jul 2007; Olivier Fisette <ribosome@gentoo.org>
+  +embassy-hmmer-2.3.2-r1.ebuild:
+  New upstream packaging for EMBOSS 5.0.0.
 
   15 Feb 2007; Jeff Gardner <je_fro@gentoo.org> embassy-hmmer-2.3.2.ebuild:
   Added ~amd64
diff --git a/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild
new file mode 100644
index 000000000000..502cc0f3fa68
--- /dev/null
+++ b/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild
@@ -0,0 +1,19 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/embassy-hmmer/embassy-hmmer-2.3.2-r1.ebuild,v 1.1 2007/07/18 01:40:24 ribosome Exp $
+
+EBOV="5.0.0"
+
+inherit embassy
+
+DESCRIPTION="EMBOSS integrated version of HMMER - Biological sequence analysis with profile HMMs"
+SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz
+	mirror://gentoo/embassy-${EBOV}-${PN:8}-${PV}.tar.gz"
+
+KEYWORDS="~amd64 ~ppc ~sparc ~x86"
+
+src_install() {
+	embassy_src_install
+	insinto /usr/include/emboss/hmmer
+	doins src/*.h
+}
diff --git a/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1 b/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1
new file mode 100644
index 000000000000..c86b987b7a0b
--- /dev/null
+++ b/sci-biology/embassy-hmmer/files/digest-embassy-hmmer-2.3.2-r1
@@ -0,0 +1,6 @@
+MD5 be4c895220ad34afd65d450ba7d8e34b EMBOSS-5.0.0.tar.gz 20666560
+RMD160 1bf510c0919d991e4ba67182137448dee49bab4d EMBOSS-5.0.0.tar.gz 20666560
+SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae EMBOSS-5.0.0.tar.gz 20666560
+MD5 3aa5707db81854f2674bf27aaeb1362e embassy-5.0.0-hmmer-2.3.2.tar.gz 565223
+RMD160 c36c09c74823645e9b557576692646731223ac1b embassy-5.0.0-hmmer-2.3.2.tar.gz 565223
+SHA256 31bbcca1f71b82170a65c4438f9cb9f1dfe3d4e066037a852060b010e3e39b5b embassy-5.0.0-hmmer-2.3.2.tar.gz 565223
diff --git a/sci-biology/embassy-meme/Manifest b/sci-biology/embassy-meme/Manifest
new file mode 100644
index 000000000000..083b6a63c1d1
--- /dev/null
+++ b/sci-biology/embassy-meme/Manifest
@@ -0,0 +1,17 @@
+DIST EMBOSS-5.0.0.tar.gz 20666560 RMD160 1bf510c0919d991e4ba67182137448dee49bab4d SHA1 1ad4edc4808a8225fe8d574e8a7d0686be99cac6 SHA256 64e6f09b82a719ff26de7f21fdf7d2bd605d2c664384c1c7b48f9d245d5f40ae
+DIST embassy-5.0.0-meme-0.1.0.tar.gz 448413 RMD160 eb5ac6315bf33190133f7f9df626ec58ccbf9de0 SHA1 21fdebf9a294aa0bdad70317c0c11f61e79e0cf9 SHA256 ed4c02010af036515203661c28776b5e773e77eccad59990b7ac1410399d45ef
+EBUILD embassy-meme-0.1.0.ebuild 606 RMD160 f69d3ae8a043f0986d7432329bb031f4d8ecf614 SHA1 807d908f3f60f8988d40802f67fcec8a84adf622 SHA256 b0ed06ff0432865685f43c29470e785105125d6528729b8a236065951eff981d
+MD5 8b42bb814fb9285e54cde7f754b2e226 embassy-meme-0.1.0.ebuild 606
+RMD160 f69d3ae8a043f0986d7432329bb031f4d8ecf614 embassy-meme-0.1.0.ebuild 606
+SHA256 b0ed06ff0432865685f43c29470e785105125d6528729b8a236065951eff981d embassy-meme-0.1.0.ebuild 606
+MISC ChangeLog 441 RMD160 7725666575bf2aff226cea6694144d455ea1fdb5 SHA1 d08a8db7904e7aa42fb9aaae121c8908ba72d093 SHA256 f4847bab99d5c6d3149db5d1fbb7124a6cdaba2c176a20368563a564ba33e7fa
+MD5 d84f492596aed91d07bfa7d8abaf1585 ChangeLog 441
+RMD160 7725666575bf2aff226cea6694144d455ea1fdb5 ChangeLog 441
+SHA256 f4847bab99d5c6d3149db5d1fbb7124a6cdaba2c176a20368563a564ba33e7fa ChangeLog 441
+MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
+MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
+RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
+SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f metadata.xml 262
+MD5 7e988e6e7f835b7a77269e05d4a734b4 files/digest-embassy-meme-0.1.0 518
+RMD160 f48db90a6b690617d5667985f522266de62823ea files/digest-embassy-meme-0.1.0 518
+SHA256 4b2bbc83111dfebd8704e18be082fe24ebdd5398df795eb99bb223c30ebc52c7 files/digest-embassy-meme-0.1.0 518