diff options
| author |   Olivier Fisette <ribosome@gentoo.org> | 2009-09-01 19:16:18 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2009-09-01 19:16:18 +0000 |
| commit | 3b03d51cb2b7c58131e30a4e8a7dd5e43445cb57 (patch) | |
| tree | 2d5e3455772db11ebc0c18facfcd946e25cc55ee /sci-biology | |
| parent | Q.A. fixes. (diff) | |
| download | historical-3b03d51cb2b7c58131e30a4e8a7dd5e43445cb57.tar.gz historical-3b03d51cb2b7c58131e30a4e8a7dd5e43445cb57.tar.bz2 historical-3b03d51cb2b7c58131e30a4e8a7dd5e43445cb57.zip | |
New upstream version.
Package-Manager: portage-2.2_rc40/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/phylip/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-909.ebuild | 45 |
3 files changed, 53 insertions, 3 deletions
diff --git a/sci-biology/phylip/Manifest b/sci-biology/phylip/Manifest index 6cb0c0d4d101..355f74f73a38 100644 --- a/sci-biology/phylip/Manifest +++ b/sci-biology/phylip/Manifest @@ -6,6 +6,6 @@ DIST phylip-3.68.tar.gz 1473441 RMD160 5f352457763c000f7dec991262bfcf4c94ac7057 EBUILD phylip-3.65-r1.ebuild 1449 RMD160 9d025fdfed5ddfc970bafc3edc66a438902dc3bd SHA1 2160cf5ab92d2ae92c3bc955e76af9c0f4a888fd SHA256 24ca13c5f948ef85adcaf3c28233b2f1f86455bcaa12b7a65d6bb41f4a689979 EBUILD phylip-3.66.ebuild 1455 RMD160 046f9c1db1bd16051d5c64f45fbd7964f292f64a SHA1 4af5c490959ae17c52af97ca03faeb0e3b0242fc SHA256 40a2560641c51bc29d0bd8bd13169acdc69e0c0ed40ea353a5f1dbb102b7873c EBUILD phylip-3.67.ebuild 1440 RMD160 1794062eaa5e0db4cae5d95e078b2135ced49b42 SHA1 388b455569c6b84678905f7fb92598386f4fc9a3 SHA256 738f79642a25e77ad3481214269d751154b6fe2f5abd691d1dbc5ee7553556b9 -EBUILD phylip-3.68.ebuild 1447 RMD160 34eaeb5a11cb519d647478aa8687151ed2a7ed23 SHA1 783bf8a152b335aae8d813d0ea198edb8aac1766 SHA256 ee7c3d9b6b3a1d077e152d1b498abb7dbc7a07d913ce070a85a7ae2f47fcced2 -MISC ChangeLog 5578 RMD160 94e3c795f8f2ce55ff0896977a8d06c23d43650a SHA1 df9e977c42984efdf5bf7d6605b018f7ff37091c SHA256 8bd2714204ea9ce5f6ca82ba3a5d55c9010fb29204209d8f4d296463f4167c4c +EBUILD phylip-3.68.ebuild 1445 RMD160 e98f5c6883f9f59152344911ec55980e343e83cc SHA1 845d8c7390eaa6bd6e8aa3eec7e604c305f43fad SHA256 9089fcb5f74f452182cdf0c29cd2d2f4b113993dc7d3760a50d35158cf5d5b2e +MISC ChangeLog 5683 RMD160 493a78dc92b30a011dcf0224a469a5fe7a221652 SHA1 6c4a7251626eff3550ee19080334c85136476d35 SHA256 877a61798785388c4dd3c4ffb6f632bf93c935a1c6e7e1e00aca41a0e5446de2 MISC metadata.xml 165 RMD160 b247a16b6552b292d1249ff4e8ea5060ad2c4372 SHA1 a9f91a3a303f4c85430e21eca09913e1c9426366 SHA256 560c375768c8e164d954d61924f110da785b4771012cb830963eaa267a319132 diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index 574b728d9f06..7b33812c769c 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/rebase # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.90 2009/09/01 18:17:52 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.91 2009/09/01 19:16:18 ribosome Exp $ + +*rebase-909 (01 Sep 2009) + + 01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> +rebase-909.ebuild: + New upstream version. 01 Sep 2009; Olivier Fisette <ribosome@gentoo.org> rebase-905.ebuild: Stabilised on amd64 and 86. diff --git a/sci-biology/rebase/rebase-909.ebuild b/sci-biology/rebase/rebase-909.ebuild new file mode 100644 index 000000000000..173dcddb7879 --- /dev/null +++ b/sci-biology/rebase/rebase-909.ebuild @@ -0,0 +1,45 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-909.ebuild,v 1.1 2009/09/01 19:16:18 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )" +RDEPEND="${DEPEND}" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} -equivalences \ + || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins REBASE/embossre.equ \ + || die "Failed to install enzyme prototypes file." + fi +} |