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authorJustin Lecher <jlec@gentoo.org>2012-10-18 17:46:33 +0000
committerJustin Lecher <jlec@gentoo.org>2012-10-18 17:46:33 +0000
commit416db462bf48ffe7565f616e57283693ea56c4eb (patch)
treefab78fe75e7b94fffa15f4c7f526eb3601c57525 /sci-biology
parentsci-biology/glimmerhmm: Drop old (diff)
downloadhistorical-416db462bf48ffe7565f616e57283693ea56c4eb.tar.gz
historical-416db462bf48ffe7565f616e57283693ea56c4eb.tar.bz2
historical-416db462bf48ffe7565f616e57283693ea56c4eb.zip
sci-biology/seaview: Drop old
Package-Manager: portage-2.2.0_alpha141/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/seaview/ChangeLog5
-rw-r--r--sci-biology/seaview/Manifest11
-rw-r--r--sci-biology/seaview/seaview-4.2.5.ebuild76
3 files changed, 9 insertions, 83 deletions
diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
index b7bd8c1bac97..cc761beb0b1b 100644
--- a/sci-biology/seaview/ChangeLog
+++ b/sci-biology/seaview/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/seaview
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.45 2012/10/17 03:36:26 phajdan.jr Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.46 2012/10/18 17:46:32 jlec Exp $
+
+ 18 Oct 2012; Justin Lecher <jlec@gentoo.org> -seaview-4.2.5.ebuild:
+ Drop old
17 Oct 2012; Pawel Hajdan jr <phajdan.jr@gentoo.org> seaview-4.3.3.ebuild:
x86 stable wrt bug #432366
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index ac36dcbfff01..be98e78a2bf5 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1,18 +1,17 @@
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
-DIST seaview_4.2.5.tar.gz 319110 SHA256 1d5d555a1afcec0218db99a132942edfdfcb05b7bb93de6c124d7d30315677c9 SHA512 a1e28cb2d8cad9620c00cb26aa3bd1bbb35255f12479eeb1b500c1d7c1d201686bfe37abe34b191dcfa69557f658c707c5c5d58b7a9175568b6325cda80d1e63 WHIRLPOOL 03f4fc98862dae69ebed4882f86f766fa26d3b5503ad3698c449fe970a9b257b6b5d146f70511307efff7bcd3f3e4d574e94ce3ddd673ebc53eba6447d50679b
DIST seaview_4.3.3.tar.gz 313375 SHA256 632286397b4959ed8e379d6a6c57715a01634a81596ed681bcd87e14e10684b4 SHA512 cc3eb433c807b3482a4e883ffc96e00b8e04b6208561d3e7c7409da25e2171e5db7a0caa252070da904bd672d68f151967133ae0801fe2c6ffdee0d9af7ec8c3 WHIRLPOOL 0310a5e707c7314e3038a7e9467fa854868b691e7f4a82a75808ddf9197c8a98030414be67649c8b6def31a350899faa615c5d38a8f69966dc60080e51964915
DIST seaview_4.3.5.tar.gz 309530 SHA256 38050d6792eb799d61e5e849f76971a9c7d45f467e5c04fbc4363062d8e7100d SHA512 b20c018da9a29d79fe0393fed5d29117729492ea8f36e72d4aeb98044a3de4a13331bd29e76ca552a08f6da764e57e69f9fb0325fc031551514d7a54b56c849a WHIRLPOOL 82fc7324bf1d934d69712629808d6b4178a5f2cdcf25351fb2fe2784f9cea0c1ec0aaaba7a3a08c84795108eb049394ceaab052af8cc0efbb0975064fa4e80e0
-EBUILD seaview-4.2.5.ebuild 1995 SHA256 2071ffd094dde4ffade7681727c611ae156f629fcb689c3487a3727ad6451411 SHA512 f607af8f27983242460257a73706afe053fd85f3e5e077c69f726472e0274bd9cfc1e8660e67d97d3f3ccd054f42211aaffc80eb73454880e9f0ebf286e741f2 WHIRLPOOL a78dddc233810df182606ce08b41cbeead2aa2bfd511bc1b2bfe484af402588f2a433f302f18e41c84ddc1b7a7b71365f5df31cbe90d11e5888f55811daf81b9
EBUILD seaview-4.3.3.ebuild 2077 SHA256 ed87af157bc2ee08daff8b4933856091d07f51053425816beacde39b571cd2eb SHA512 c7a615730e29ff97d5d60f524014e91235ee6b157031f229dd6fc4f3bc0a39a3361bd380a96acdf9279a659da7a7563cd063c3607e94d14772aea0b2082727a8 WHIRLPOOL 9bb18a3d8cd243c238928f9bef5295b0283307a08d13999f2b0438000724e2bfc22017ad4b0ea03e36ecbde513f1bb8017c9c482f3feee8a9864f7a55e8136db
EBUILD seaview-4.3.5.ebuild 2073 SHA256 2c56053e9e953c2d5fb119ea3773b24ab7b43bf9ce40dd1e441f1ffbebc5c9a1 SHA512 41c7ca612de6f38e8ffc18f7cde791be444c21b8f57ef3691c0b1272e8767e5e3f976fc63033a6c3aed9d0ed69845af18de26f2a96c4fe290563363c9d5ad6bf WHIRLPOOL 8efd5cb3776417401c7e0d6d08fe96e26c8de246b9bd464d8a351edc02761fb088c9206a90356a3c1ddb759ea0712a56fe5ac23dd2addf1539ac7eed6a112af3
-MISC ChangeLog 7776 SHA256 fbc5f05c6877e200e7e3092e2751ae7be667600be454d4dd86744803481abd84 SHA512 f43162efdf3eebe0f40bab0a8a4639a9081888a1a992838b91927bc65647cbea182f2f22cc70d081e15279835352c5399fc4f6c641db109d76a8775dde7f8c48 WHIRLPOOL 6ba3665340a5f9c428007e427bb9929ed9a0b168698f4a63e0f72d37cb8e77a29cb789a189219abe444fe16c4d81e4713621dd88c478c6c579a578f1e4952852
+MISC ChangeLog 7852 SHA256 8b0d34b2ffc852e3cee2037431096849f2dc7acbaf7fb3931491afd2a763963a SHA512 9def0e33c4f75f3ac2cb710cc81fb8ff5c7cc566e50372920084132056b068210c31175dfbdeb9c4a2afe73d0d98f91e487379b0b335fafbf19274772bc97ca9 WHIRLPOOL 16bfa6bea5b36b01477c233f4cb1ac72409a99fb350f368acd8aa99acae8ec17a97dd2788f41ac465e66e61838e4db7d515a445b795f0c687a25445f4d898e02
MISC metadata.xml 619 SHA256 ee63d33ca527ca555056c6bc3a7d89fa9b5f32e5f82b7eae27b1c030c80ced9e SHA512 5998f220ed365bdf6b019d7b05507f73460a0e1d26dc8a4db360fdafd8029cb66c208c5e028a59ecdbbc6a9d54c21faef19ec10515cc4b70f64a68aa7df2ede2 WHIRLPOOL b2fb68a7946ca3327ee1e6b546ab2e4fab381148df48bb9f3b1c6bcaced1f3146bc3a37ab3d91f45bbd87ebd5de29fd0590cb724d2679b63d42f1ff2d1e5a3bc
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+Comment: GPGTools - http://gpgtools.org
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-YQCeO4/Q0IpR++ZJmP1MynNjN+L9xH8=
-=VYsE
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diff --git a/sci-biology/seaview/seaview-4.2.5.ebuild b/sci-biology/seaview/seaview-4.2.5.ebuild
deleted file mode 100644
index 6d5cb9ab2e33..000000000000
--- a/sci-biology/seaview/seaview-4.2.5.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-4.2.5.ebuild,v 1.7 2012/09/14 11:46:14 jlec Exp $
-
-EAPI=4
-
-inherit base eutils multilib toolchain-funcs
-
-DESCRIPTION="A graphical multiple sequence alignment editor"
-HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
-SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz"
-
-LICENSE="public-domain"
-SLOT="0"
-KEYWORDS="amd64 x86"
-IUSE="+xft"
-
-DEPEND="
- sys-libs/zlib
- x11-libs/fltk:1
- x11-libs/libX11
- xft? (
- x11-libs/libXft
- x11-libs/fltk:1[xft] )"
-RDEPEND="${DEPEND}
- sci-biology/clustalw
- || ( sci-libs/libmuscle sci-biology/muscle )
- sci-biology/phyml"
-
-S="${WORKDIR}/${PN}"
-
-src_prepare() {
- # respect CXXFLAGS (package uses them as CFLAGS)
- sed \
- -e "s:^CXX.*:CXX = $(tc-getCXX):" \
- -e "s:\$(OPT):${CXXFLAGS}:" \
- -e "s:^OPT:#OPT:" \
- -e "s:^FLTK = /usr/include:FLTK = /usr/include/fltk-1:" \
- -e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cxxflags):" \
- -e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \
- -e "s:^USE_XFT:#USE_XFT:" \
- -e "s:^#HELPFILE:HELPFILE:" \
- -e "s:^#PHYMLNAME:PHYMLNAME:" \
- -e 's:-lXinerama::g' \
- -e 's:-lpng::g' \
- -e 's:-ljpeg::g' \
- -e 's:-lfontconfig::g' \
- -i Makefile || die "sed failed while editing Makefile"
-
- if use xft; then
- sed \
- -e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $(pkg-config --cflags xft):" \
- -e "s:-lXft:$(pkg-config --libs xft):" \
- -i Makefile || die "sed failed while editing Makefile to enable xft"
- else
- sed -i -e "s:-lXft::" Makefile || die
- fi
- cd FL || die
- ln -sf . FL
- base_src_prepare
-}
-
-src_install() {
- dobin seaview
-
- # /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
- insinto /usr/share/seaview
- doins example.nxs seaview.html
-
- insinto /usr/share/seaview/images
- doins seaview.xpm
-
- make_desktop_entry seaview Seaview
-
- doman seaview.1
-}