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authorJustin Lecher <jlec@gentoo.org>2012-11-09 14:39:18 +0000
committerJustin Lecher <jlec@gentoo.org>2012-11-09 14:39:18 +0000
commit4a703d9af5df619b15ee9321dda880c85a25ba2d (patch)
tree8fb5acbf5ca4c8b22608775b965b03442c254e0f /sci-biology
parentsci-biology/qrna: Move to EAPI=4 (diff)
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sci-biology/express: Keyworded for ~x86; drop needless version restriction of boost, #440634
Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/express/ChangeLog5
-rw-r--r--sci-biology/express/Manifest14
-rw-r--r--sci-biology/express/express-0.9.5.ebuild14
3 files changed, 17 insertions, 16 deletions
diff --git a/sci-biology/express/ChangeLog b/sci-biology/express/ChangeLog
index 64f7a6d4f8a7..13ebca949778 100644
--- a/sci-biology/express/ChangeLog
+++ b/sci-biology/express/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/express
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/ChangeLog,v 1.2 2012/10/31 18:47:28 flameeyes Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/ChangeLog,v 1.3 2012/11/09 14:39:17 jlec Exp $
+
+ 09 Nov 2012; Justin Lecher <jlec@gentoo.org> express-0.9.5.ebuild:
+ Keyworded for ~x86; drop needless version restriction of boost, #440634
31 Oct 2012; Diego E. Pettenò <flameeyes@gentoo.org> express-0.9.5.ebuild:
Avoid using a slot depend since now boost is unslotted.
diff --git a/sci-biology/express/Manifest b/sci-biology/express/Manifest
index c59464e6eb59..19a48109989f 100644
--- a/sci-biology/express/Manifest
+++ b/sci-biology/express/Manifest
@@ -2,17 +2,13 @@
Hash: SHA256
DIST express-0.9.5-src.tgz 766024 SHA256 e17250d62750560c2dc9cb579f58784b5076afb74088f36523ddd623e08bc022 SHA512 3a7360ffbe57f4f712b6db38d551d31384d995050a86238d79299edb12f0e7f5dca6f362b7858b5051ea2879af2b3559f78f9780d75ef2ef6fdad7398f781403 WHIRLPOOL 290772dceca2465f922f5d5fe548dc8fd460422589697173c58f98dc3afa2e91175fe1fa52e5f29458ea6af74c8da609776fa583bf5efcb2d5771c4c9ad51cde
-EBUILD express-0.9.5.ebuild 955 SHA256 2f895203713025f614e108d30190d1fa3dab6d3d2dbf69f5bfb300261dc71a7f SHA512 86bb711476bf3150004918a043949e1f9fb8c3c25b276df23f4d2bada983bf5ce2732e0d9aec0580247618654af2883b47f02dd5b83617f01c2096216c421c8b WHIRLPOOL 15206d788ab8cec248466c71f6006f94f84031d665b137eca6de7acedf854eec8fa4c607b32c5eef8e8139e7a6c93148b27d412dca2bda2dae764bb66f3841d3
-MISC ChangeLog 507 SHA256 b537516ccf22015ca4b347c98ac6106dcea1bce2331ecd2eac7f4856a637e191 SHA512 4258f716c35b0cb35415dac0bdff5f9a38e35bbb56249da29ff83170409979c3e177f87bf5e15278cdf3f1aa6f36a1785427e800684b2e560a8b63ac5fa935fa WHIRLPOOL 387434544795069904dda6ffd6b8f55b8077f0bb5edb31bb4eee328c7d123754a14cab53e76971ddde47d72d04d82cf136f29e193294242283ebb0fe9407be07
+EBUILD express-0.9.5.ebuild 954 SHA256 954e8a1e60051ed5ab3abc476d27337f0dc26caabeabdc4301a0508c3bd50424 SHA512 ab4019ec226ef59582da0b8781ec27451cc466a6bfca0ae22785eee90bf55675802d00cf165a5bbd8cc58c1caf65dbec7b964c8a5682458692934e7c5eb87c34 WHIRLPOOL 434f44957d0d313d513e2ffe1012be1349bda952d5adcb2e89ff3d71979a3888445bf22485e135b9f6f4c2dd67ca6d1dde9cce628614bc6b960c61fe9cfabbdc
+MISC ChangeLog 646 SHA256 94d95238ec36fbaec7a75e3c5f94a5fafa0cf505d5d6e9ff70c0d354b68e57cf SHA512 8f72562229e1953176e7ea21b84565fd5bfdf40c72bc402674bff35f733c5e3c74bff1cd6f7d5a152e5308abec2a5097fa527da0867cb0bd22dd8e2842b62b9e WHIRLPOOL be3ab636a5493fd226964b5c04a06b19aa34ab15c18fabeab40d1012fd4703305f8bdf75b4539fb0f8ba5d79b52be15b3db8f8ff442e785f47fd0da261b7f971
MISC metadata.xml 259 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 SHA512 c3aea4d69d75075af0108a03b7e109cfed6a1fe324f8ccbda3d4e5ca8a5070f1b24ddeb46b64787e10fd22252d867abcee1f31316d602f7e32fe3c990ae60d74 WHIRLPOOL e50da2f26fd4c908446d22da3edb595d60e61d72def374be46440358802a211fc34045b7ad970c4f94b57f7b17ff24cfe64dc94254fea20e047f1fbbbcae0c64
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v2.0.19 (GNU/Linux)
-iQEcBAEBCAAGBQJQkXJEAAoJEBzRPIrUMBNCKu4IAKFbeYfC/9Cz/atRsCT2m7AT
-T3PU8dHS8OH1YlNVGo5XTy5a63A8N7w0IYVvNthe2K1RGnDwwoK7SsyydR0zk1Ls
-CqlKk7LjrrEuF2yglEAuAu9I8UzLojvcxk/WU2AXH8qyKkSbCXc0/BB9qQg9AKkL
-kaaBVOAq0CEa3jVO1oWvu2fe3CRKOAMfmgLQygXaDINLWhOufKRdLfpkbhtQvWQ2
-YTatL7cuFqRLnT8BCBC1MtOQhebAyBT+amYGS+3QOcaaLont3dLcryl9MAyNmOYx
-RpZqTjBgXnn1QgMNtUWauA9JGvL6yWOXt7slMN4yFtvVh46JB2G/dyWQAslg1n8=
-=zybw
+iEYEAREIAAYFAlCdFZYACgkQgAnW8HDreRbyeACaA8jFbrwDpF9GWKSFgyLW+M0r
+DocAnj2blogIADjJI1H3Df4QsSSCxNdH
+=DLYk
-----END PGP SIGNATURE-----
diff --git a/sci-biology/express/express-0.9.5.ebuild b/sci-biology/express/express-0.9.5.ebuild
index 5f3e8d6a372e..b4cd184a3de0 100644
--- a/sci-biology/express/express-0.9.5.ebuild
+++ b/sci-biology/express/express-0.9.5.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/express-0.9.5.ebuild,v 1.2 2012/10/31 18:47:28 flameeyes Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/express/express-0.9.5.ebuild,v 1.3 2012/11/09 14:39:17 jlec Exp $
EAPI=4
@@ -12,11 +12,12 @@ SRC_URI="http://bio.math.berkeley.edu/eXpress/downloads/express-${PV}/express-${
LICENSE="Artistic"
SLOT="0"
+KEYWORDS="~amd64 ~x86"
IUSE=""
-KEYWORDS="~amd64"
-DEPEND="sys-libs/zlib
- =dev-libs/boost-1.46*
+DEPEND="
+ dev-libs/boost
+ sys-libs/zlib
sci-biology/bamtools"
RDEPEND="${DEPEND}"
@@ -25,9 +26,10 @@ S="${WORKDIR}/${P}-src"
CMAKE_USE_DIR="${S}/src"
src_prepare() {
- sed -i -e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \
+ sed \
+ -e 's|"${CMAKE_CURRENT_SOURCE_DIR}/../bamtools/lib/libbamtools.a"|bamtools|' \
-e '1 a find_package(Boost 1.46 COMPONENTS filesystem program_options thread)' \
-e '1 a find_package(ZLIB)' \
-e '/add_executable/ a include_directories("/usr/include/bamtools")' \
- src/CMakeLists.txt || die
+ -i src/CMakeLists.txt || die
}