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authorJustin Lecher <jlec@gentoo.org>2013-07-02 12:47:35 +0000
committerJustin Lecher <jlec@gentoo.org>2013-07-02 12:47:35 +0000
commit5ecdaf5f2bacf49c7d89b8b43d71fcd58c6542ce (patch)
tree41f9fa8b1da80cec79f95df4b442e960a158fff1 /sci-biology
parentremove old (diff)
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sci-biology/biopython: Fix deps for python
Package-Manager: portage-2.2.0_alpha186/cvs/Linux x86_64 Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/biopython/ChangeLog5
-rw-r--r--sci-biology/biopython/Manifest10
-rw-r--r--sci-biology/biopython/biopython-1.61.ebuild12
3 files changed, 13 insertions, 14 deletions
diff --git a/sci-biology/biopython/ChangeLog b/sci-biology/biopython/ChangeLog
index 4513c05c7205..52f4ef7be870 100644
--- a/sci-biology/biopython/ChangeLog
+++ b/sci-biology/biopython/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/biopython
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.70 2013/06/06 08:38:13 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.71 2013/07/02 12:47:34 jlec Exp $
+
+ 02 Jul 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild:
+ Fix deps for python
06 Jun 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild:
Keyword ~-linux
diff --git a/sci-biology/biopython/Manifest b/sci-biology/biopython/Manifest
index 9f2fdc9fd180..5c85f6501919 100644
--- a/sci-biology/biopython/Manifest
+++ b/sci-biology/biopython/Manifest
@@ -9,13 +9,13 @@ DIST biopython-1.61.tar.gz 10557825 SHA256 61ec95432f085277da90cde811feee78ced8c
EBUILD biopython-1.57.ebuild 1423 SHA256 9096221918c30adbd01157581f42e61286cb7d20b8ad52ad52756d8c7de155df SHA512 782410b327703e9d6d612c22daf4c977e06051995e7d7a9763690ef101d0261e0689b7787a27ae0a205d26a01df09fa6b98e2d4bc6047856b35917bb87a3a262 WHIRLPOOL a58be3d9ed1aa3fee35d2fbf5ad208b82a1e0ff6067aa989a21989f9f45d5fe6020eb4ee639cdd2ab87820dbb5f52bdcb53aebe300e91c45584f000b914c41de
EBUILD biopython-1.58.ebuild 1426 SHA256 f81164aafdb8b60963bbfc169fe103ca182c3d13fcfac1ebe1de62c08d4267bf SHA512 d03df5653dc6265bcd90bccec157a4e28e455bf0aa7473c2ca3ae72af059ea0c1100d4274ac140595259aeff98e3540b499905e480ab310e9e664bf149586695 WHIRLPOOL 79078204643918d609d02a586bad87d04bd58dce14b9f503472ba1fecade6a084476e78c980bcaa46c64f5a7db150c7408aa7aeea07ae78407d93dfdc69287cd
EBUILD biopython-1.59.ebuild 1426 SHA256 062a763ab89f982dad4bc36d358359a1d80fc64a79cae5f7ab0ddc797edcf4c3 SHA512 50cba2bac1b5379b673f6ff82c8607195bc33441156b94f914938a1fe0aaff2e1894077eaacc158a7e14ed10598a29f22960460490d2f25fac3ad6a00faa646f WHIRLPOOL 477f06e99a07c30773c388134db9492ae02a0a1b4626af2fd281ced42694ea445b360d10b0cfca5fa5de03a49fb39ab87ed54670ec076147725a602ba45c66bc
-EBUILD biopython-1.61.ebuild 1434 SHA256 22cc23c4b83e4cc3523da211330649a655509452a007711843e51f84cd1e770f SHA512 a8124f41c0c4d954f83a28074327c8693f0dee17e311da26ae81ed54627314bc409f7a242b7a22c14f2b3c13295cce3b7404b78c85a577cb2ebae3ef2d6806de WHIRLPOOL 3750c1073443826768ca06323b1343c69e1e996b6b010d2c678c532b34a27ccc0dc79e6ec4d784ff16bbe1c63c1d5a0bad433b88da147d1db644d46d7ae7fea4
-MISC ChangeLog 11046 SHA256 09a0b6f95ce4aa9729acc3b288cf4350663d3b57447f6b1035d790e65bf7509b SHA512 fa8d1e0dacf30ccafeed7849e77b92e4d8e921c6322955fb669606d3d0832251ef543e97c99434b4201370c046eb52acde92d55d84a9e24e6ede396f50af67f7 WHIRLPOOL d22076809dabf268e847d231270f505b2818277682702601c57dda62c006122b2e182f0dd2795a2c5fd3d4b53d8561498cf39d6d99e4efd46bc32b301d9a39cd
+EBUILD biopython-1.61.ebuild 1314 SHA256 73bb77089b9aa06687d5aae8675b99d8447c092dd408daf29d7cfda04aecb56f SHA512 6ebe97c1659f71539a1dd60c9178344046085d9f3c3787f8a62d702c3026031dbafa6d49afaad2c3eb1270edfce40fd0ad749be76ce8792f7afe6b1790ae4b09 WHIRLPOOL 14430afb8e9c2bb53c175161ea2483a4825b1322934e72eb6655d8e3332652419302438050935c441a86aa5a387020e064ea57b07cfd53d90c42659ab17c0d22
+MISC ChangeLog 11139 SHA256 e4ea28458e3a4a8224f05b56ebbe2322f44b31238bfb1fa950d530a30cbcec22 SHA512 40d4f57d3b6b331a01f25cb88d3e5850e6c06495192e5e0d68b7855a69bae931ffbd9a20e296b470fac46a32c5e053a977a92435dce846d9878be9ff5501fbe7 WHIRLPOOL 4c966825ee9a20d72c5c2db4a64cdbbdccc573ba51d1851e68df01803ace0015153568a93fc0f0ecf332f4a293d9cb0d64653e4901a47c1216e13105c1c5787e
MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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Version: GnuPG v2.0.20 (GNU/Linux)
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-Z90An20Kgs5KIn+dTHCoRmC9bqBSfStW
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diff --git a/sci-biology/biopython/biopython-1.61.ebuild b/sci-biology/biopython/biopython-1.61.ebuild
index 08e5fe14a85a..22ccbb08daef 100644
--- a/sci-biology/biopython/biopython-1.61.ebuild
+++ b/sci-biology/biopython/biopython-1.61.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild,v 1.2 2013/06/06 08:38:13 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.61.ebuild,v 1.3 2013/07/02 12:47:34 jlec Exp $
EAPI=5
@@ -17,7 +17,9 @@ SLOT="0"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
IUSE="mysql postgres"
-RDEPEND="
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="${PYTHON_DEPS}
dev-python/matplotlib[${PYTHON_USEDEP}]
dev-python/networkx[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
@@ -29,13 +31,7 @@ RDEPEND="
DEPEND="${RDEPEND}
sys-devel/flex"
-#PYTHON_CFLAGS=("2.* + -fno-strict-aliasing")
-
-#DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1"
DOCS=( CONTRIB DEPRECATED NEWS README )
-#PYTHON_MODNAME="Bio BioSQL"
-
-#PATCHES=( "${FILESDIR}"/${PN}-1.51-flex.patch )
python_test() {
cd Tests