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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-21 08:12:46 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-21 08:12:46 +0000 |
| commit | 662097e48cc879f3b7e02d8379e8cf464938a6d2 (patch) | |
| tree | 631b0e96a6b7d877980481909761aed2097fd1da /sci-biology | |
| parent | Version bump. (diff) | |
| download | historical-662097e48cc879f3b7e02d8379e8cf464938a6d2.tar.gz historical-662097e48cc879f3b7e02d8379e8cf464938a6d2.tar.bz2 historical-662097e48cc879f3b7e02d8379e8cf464938a6d2.zip | |
Fix compilation with glibc-2.10, bug 273988
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/lagan/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/lagan/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/lagan/lagan-2.0-r1.ebuild (renamed from sci-biology/lagan/lagan-2.0.ebuild) | 15 |
3 files changed, 18 insertions, 9 deletions
diff --git a/sci-biology/lagan/ChangeLog b/sci-biology/lagan/ChangeLog index c48f7c0d4655..7222c8cba060 100644 --- a/sci-biology/lagan/ChangeLog +++ b/sci-biology/lagan/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/lagan # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/ChangeLog,v 1.1 2009/02/27 00:23:49 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/ChangeLog,v 1.2 2009/07/21 08:12:46 weaver Exp $ + +*lagan-2.0-r1 (21 Jul 2009) + + 21 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> -lagan-2.0.ebuild, + +lagan-2.0-r1.ebuild: + Fix compilation with glibc-2.10, bug 273988 *lagan-2.0 (26 Feb 2009) diff --git a/sci-biology/lagan/Manifest b/sci-biology/lagan/Manifest index 422a894f234a..c0d049c25429 100644 --- a/sci-biology/lagan/Manifest +++ b/sci-biology/lagan/Manifest @@ -1,5 +1,5 @@ AUX lagan-2.0-gcc4.3.patch 821 RMD160 2334def85c5859c4ceabc91f997843465a2d89b6 SHA1 1aeeb1a585f70fcad08688e1fbee9e0b626337a5 SHA256 e0575359288e7de97d35a7cce7b92c5619d2f75026beefc9139042280aa20a22 DIST lagan20.tar.gz 589115 RMD160 a55680c95efc84a4cdc21508223fd0f9bc934f98 SHA1 592ca7e92c7307861e4b2bb66820d1dce1663376 SHA256 a65e61ed4fd6608f4e5ad5b11a1b77f4fec1a207d822c5885b3e86727496e1fe -EBUILD lagan-2.0.ebuild 1305 RMD160 6c7e4082083c1751f66b5dd1c333982d3383a881 SHA1 5b0f0e572d4b4b90f82beb00629ec1e25f978d8e SHA256 ed6010d84c218bfa29ade15da142aefce476e69ad5bc7b19428334c455a0362b -MISC ChangeLog 479 RMD160 5b98cefeae1b02befb72171124d26aa0252fca29 SHA1 240bda6b9c942b53d26d7b4834af2d1cfb737d1e SHA256 24120bf8e45a4675c938bb1b788bcf5c8da805be2dc98c3513820df628c89cb2 +EBUILD lagan-2.0-r1.ebuild 1511 RMD160 680c5ef49f027bd9f53277e17c7a1a0a349ef37b SHA1 e54f1be34527d1a53da5f4bbe10177083f3f87b1 SHA256 8841f720716d88a50035c3c62e1cde556c63ccd270f0f9acf4801c064ff08718 +MISC ChangeLog 648 RMD160 53007ab8e697c001196adfc048f4dd66579e0dcf SHA1 2b8d74ab8564759064024209332c53caad35befc SHA256 336dfccfca0350ad457cff7309f2a445a615fe79a8fc6ae1511a9e3ff72b4cc1 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/lagan/lagan-2.0.ebuild b/sci-biology/lagan/lagan-2.0-r1.ebuild index 79049af85ace..9ce6c90116b8 100644 --- a/sci-biology/lagan/lagan-2.0.ebuild +++ b/sci-biology/lagan/lagan-2.0-r1.ebuild @@ -1,14 +1,16 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/lagan-2.0.ebuild,v 1.1 2009/02/27 00:23:49 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/lagan-2.0-r1.ebuild,v 1.1 2009/07/21 08:12:46 weaver Exp $ + +EAPI="2" inherit eutils -MY_PV="20" +MY_P="lagan20" DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA" HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml" -SRC_URI="http://lagan.stanford.edu/lagan_web/lagan${MY_PV}.tar.gz" +SRC_URI="http://lagan.stanford.edu/lagan_web/${MY_P}.tar.gz" LICENSE="GPL-2" SLOT="0" @@ -18,11 +20,12 @@ KEYWORDS="~amd64 ~x86" DEPEND="" RDEPEND="" -S="${WORKDIR}/lagan${MY_PV}" +S="${WORKDIR}/${MY_P}" -src_unpack() { - unpack ${A} +src_prepare() { sed -i "/use Getopt::Long;/ i use lib \"/usr/share/${PN}/lib\";" "${S}/supermap.pl" || die + # NB: Testing with glibc-2.10 has uncovered a bug in src/utils/Sequence.h where libc getline is erroneously used instead of own getline + sed -i 's/getline/my_getline/' "${S}"/src/{anchors.c,glocal/io.cpp} || die epatch "${FILESDIR}"/${P}-*.patch } |