Version bump, drop old

Package-Manager: portage-2.2_rc86/cvs/Linux x86_64

4 files changed, 51 insertions, 53 deletions

diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog
index 4f5fe5fa4781..4141566ae33e 100644
--- a/sci-biology/primer3/ChangeLog
+++ b/sci-biology/primer3/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/primer3
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.23 2010/08/31 12:16:41 xarthisius Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.24 2011/02/03 17:08:52 weaver Exp $
+
+*primer3-2.2.3 (03 Feb 2011)
+
+  03 Feb 2011; Andrey Kislyuk <weaver@gentoo.org> -primer3-1.0.0.ebuild,
+  +primer3-2.2.3.ebuild:
+  Version bump, drop old
 
 *primer3-1.1.4-r2 (31 Aug 2010)
 
diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest
index 35c76261eb1f..5e7f87924462 100644
--- a/sci-biology/primer3/Manifest
+++ b/sci-biology/primer3/Manifest
@@ -1,20 +1,8 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
 AUX primer3-1.1.4-ldflags.patch 882 RMD160 c67d4e03fc68155d2a74276bbc7e409bc8e8096b SHA1 5346c976c80b6a474e352f3a27c6153648d58a2b SHA256 10ef0f1491df83c60f5919fcc461a0864e12a0303d8242f4e3ea1c2f8963c436
 DIST primer3-1.1.4.tar.gz 974628 RMD160 87535d123d4c00b64eb763e4e567c5c83fde6b54 SHA1 fcabf7d8aa31c5568bd130b318c3ead4a1b9aa3a SHA256 1cb045791afd3c4033956a65687ca0c1b1a6607ac84705bf4ed7d7151691980b
-DIST primer3_1.0.0.tar.gz 936696 RMD160 c08329cafcb8bf702a1654b4348a418b20e55c88 SHA1 0227f1f26c8b45dff9033543bee4387ade173c73 SHA256 fcbcf2e540e0062f3fa0d723b443b04a1c31e3e03e3aa5d97e3b2f910499f34b
-EBUILD primer3-1.0.0.ebuild 737 RMD160 1272a7c0f374709842089c42eb6259e1a5f5d8ae SHA1 02176df438d96fcf199a2ab10afa3e233ad224c5 SHA256 15d1a3be8db86847824d344970b9e9e41140537132198b829c5239f97176306e
+DIST primer3-2.2.3.tar.gz 2284282 RMD160 040b41649f5bfc17214502b2ba5e98d1a5afd73f SHA1 20c6a00455b86a5712c1e297930f2624fca45881 SHA256 2e68d638119bfcac12571da351cf261e28a3dd4b32c89074ce17065931a98774
 EBUILD primer3-1.1.4-r2.ebuild 973 RMD160 1ad7270638ba327822f85e884d2d6ad1b5f45edd SHA1 0b6d49ca6506919e27d3706eee65d9a17cc1ff47 SHA256 0d256c50aaf34f381b82e4793220a3c846c1b95a74fd3133b2c8145499688e25
 EBUILD primer3-1.1.4.ebuild 784 RMD160 bac03e8b11917a1143deff34626dae8efdc0cd44 SHA1 5a1d7ff14dd1350960b570eb8d0f18946a570cf9 SHA256 dc43587ef1b94b22632f4307120b52fea1b3bad7d94bdc68ae083f1ffc8443fb
-MISC ChangeLog 3691 RMD160 164ec0c589dabd8461457e193668cfccdd89031e SHA1 24659bd78bff5fad79105a5b2219d9ca41888ffa SHA256 8158bf7879fcda5678d76f2a532ade502ee8634e18f4e14b9a3904fdab08313f
+EBUILD primer3-2.2.3.ebuild 1010 RMD160 13edabc9d289d994ab7b6554c1998b2b0acada50 SHA1 972116704387bf8037caf4ed630995e076c329bd SHA256 76327ce256e5cc1a939ca14e02e49c5ad298cadb8766274e73104203a1952a18
+MISC ChangeLog 3841 RMD160 31e8f9759a356481fe1994aff916ce6e2f85d42a SHA1 d11176e1860a75a173b6f58337af8230a97dfd72 SHA256 bdf0c04f9dd2d8d6c604da5e239e00032f7582032a74d083673fa6e229b27cd3
 MISC metadata.xml 624 RMD160 b9c9f7ed6eb37504dbe39d7fd2c12ea7c0e2b557 SHA1 ecbd008512496eeefae63e1d36bdbe66e71e63fc SHA256 f612edc94f6538c9acf99caadc2a7d6e33cac6f933db9deafae777c7a45505bb
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-
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diff --git a/sci-biology/primer3/primer3-1.0.0.ebuild b/sci-biology/primer3/primer3-1.0.0.ebuild
deleted file mode 100644
index 353e65dbb97e..000000000000
--- a/sci-biology/primer3/primer3-1.0.0.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-1.0.0.ebuild,v 1.14 2008/08/26 19:08:09 ribosome Exp $
-
-DESCRIPTION="Design primers for PCR reactions."
-HOMEPAGE="http://primer3.sourceforge.net/"
-SRC_URI="http://frodo.wi.mit.edu/${PN}/${PN}_${PV}.tar.gz"
-LICENSE="whitehead"
-
-SLOT="0"
-KEYWORDS="amd64 ppc ppc64 ~sparc x86"
-IUSE=""
-
-RDEPEND=""
-
-DEPEND="dev-lang/perl"
-
-S=${WORKDIR}/${PN}_${PV}/src
-
-src_unpack() {
-	unpack ${A}
-}
-
-src_compile() {
-	emake -e || die
-}
-
-src_test () {
-	cd ../test
-	perl primer_test.pl primer3_core || die
-}
-
-src_install () {
-	dobin primer3_core
-	dodoc release_notes ../README ../example
-}
diff --git a/sci-biology/primer3/primer3-2.2.3.ebuild b/sci-biology/primer3/primer3-2.2.3.ebuild
new file mode 100644
index 000000000000..dd74e89a4c60
--- /dev/null
+++ b/sci-biology/primer3/primer3-2.2.3.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.2.3.ebuild,v 1.1 2011/02/03 17:08:52 weaver Exp $
+
+EAPI="3"
+
+inherit toolchain-funcs
+
+DESCRIPTION="Design primers for PCR reactions."
+HOMEPAGE="http://primer3.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
+LICENSE="GPL-2"
+
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND=""
+
+src_prepare() {
+	perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC|CPP|CFLAGS|LDFLAGS)\s*=/' src/Makefile || die
+}
+
+src_compile() {
+	emake -C src || die
+}
+
+src_test () {
+	emake -C test || die
+}
+
+src_install () {
+	dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core} || die \
+		"Could not install program."
+	dodoc src/release_notes.txt example primer3_manual.htm || die \
+		"Could not install documentation."
+	insinto /opt/primer3_config
+	doins -r src/primer3_config/* primer3*settings.txt || die
+}