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author | 2010-10-22 15:44:40 +0000 | |
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committer | 2010-10-22 15:44:40 +0000 | |
commit | 8fe42df80111b0d3670c4ed0183396878c8e0d3f (patch) | |
tree | dd20f23ee8fffe5f919a6d9060f497813fd67994 /sci-biology | |
parent | stable x86, bug 341703 (diff) | |
download | historical-8fe42df80111b0d3670c4ed0183396878c8e0d3f.tar.gz historical-8fe42df80111b0d3670c4ed0183396878c8e0d3f.tar.bz2 historical-8fe42df80111b0d3670c4ed0183396878c8e0d3f.zip |
Respect LDFLAGS wrt bug 342089. Thanks to Diego for the report. Bump to EAPI=2, add missing dies, drop empty depends. Drop old. Add missing quotes to stable ebuild.
Package-Manager: portage-2.2_rc98/cvs/Linux x86_64
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/phyml/ChangeLog | 10 | ||||
-rw-r--r-- | sci-biology/phyml/Manifest | 16 | ||||
-rw-r--r-- | sci-biology/phyml/phyml-2.4.5-r2.ebuild (renamed from sci-biology/phyml/phyml-2.4.5-r1.ebuild) | 29 | ||||
-rw-r--r-- | sci-biology/phyml/phyml-2.4.5.ebuild | 6 |
4 files changed, 37 insertions, 24 deletions
diff --git a/sci-biology/phyml/ChangeLog b/sci-biology/phyml/ChangeLog index 84cd56c8ecec..3e4a0456ea13 100644 --- a/sci-biology/phyml/ChangeLog +++ b/sci-biology/phyml/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-biology/phyml # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/ChangeLog,v 1.5 2010/07/16 09:54:58 fauli Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/ChangeLog,v 1.6 2010/10/22 15:44:40 xarthisius Exp $ + +*phyml-2.4.5-r2 (22 Oct 2010) + + 22 Oct 2010; Kacper Kowalik <xarthisius@gentoo.org> phyml-2.4.5.ebuild, + -phyml-2.4.5-r1.ebuild, +phyml-2.4.5-r2.ebuild: + Respect LDFLAGS wrt bug 342089. Thanks to Diego for the report. Bump to + EAPI=2, add missing dies, drop empty depends. Drop old. Add missing quotes + to stable ebuild. 16 Jul 2010; Christian Faulhammer <fauli@gentoo.org> phyml-2.4.5-r1.ebuild: diff --git a/sci-biology/phyml/Manifest b/sci-biology/phyml/Manifest index 05c1e1aab7b2..257d5f9eedbc 100644 --- a/sci-biology/phyml/Manifest +++ b/sci-biology/phyml/Manifest @@ -2,14 +2,16 @@ Hash: SHA1 DIST phyml_v2.4.5.tar.gz 92143 RMD160 4883cefd023a59ec6a8e6a780774b1800b37d714 SHA1 d76920654ca50c97fa7db77125ccce29f572d238 SHA256 e8a1d3980137f8e528d0e59472aff37dbac615860a7d3ee4cdb64f30dfea296e -EBUILD phyml-2.4.5-r1.ebuild 716 RMD160 032dc5163b88ff94853ab8911bf34670f7c14016 SHA1 be60d48af5de7113550e0e8e88af796930580f42 SHA256 7306ce738fc6970c7876d78001b78321b6a31f253009a59e841f483da82ea2a2 -EBUILD phyml-2.4.5.ebuild 708 RMD160 528fa479680214e422e2cac9c09bbd7f456c2ca1 SHA1 afc2076b696e7507604e51a7ea88dd600a788134 SHA256 1158910cd16a6540590bb27deb5d446595c1f4e71a6ce515bfed274ba52b96b1 -MISC ChangeLog 772 RMD160 3f275d76afd9a096641c86fefe6cde399828a2bc SHA1 7b9ab40d17f6580007c43406400aebfba8717d1e SHA256 242b6bd954fad147cbc0d32e93a5f493988ee10e6d7e33baa8c20bc9ebf2a3eb +EBUILD phyml-2.4.5-r2.ebuild 718 RMD160 dd6236eff025b577468c49f0f55c71c83fb8cb73 SHA1 75288f84d9c4a56ff28f6c92f8143de06939881d SHA256 fb30747a542899164e7f378216fca7cbbee95d81862154796b27a912f97b5747 +EBUILD phyml-2.4.5.ebuild 715 RMD160 d49012ddf58df27b2beb5c66909809ade868a4e1 SHA1 519c6abb92487056757f17113badf29de609f840 SHA256 bffdefef389511fb6b42b36d9392f0bd9a53812a8003224948606021273c201e +MISC ChangeLog 1104 RMD160 6c8c39fdac0c300455f3a04c64a82cdd29dada5d SHA1 09fb5c3fe0b83bad958ab7d65b6f1b8dbc5f3b7c SHA256 cad14dc1f65bba126b4cd42276988d6807974d6e1d8ec4454c9bdd134c6eab24 MISC metadata.xml 471 RMD160 db59b371ce5a4402a6c5620cf4e75fce066ff178 SHA1 663109f3d8793ae3c3fc800eb3639ae46add0dc6 SHA256 de8e1579b6bc09e581961036083d6947e0f968447106d130a5dd11e90ba9c5d6 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.15 (GNU/Linux) +Version: GnuPG v2.0.16 (GNU/Linux) -iEYEARECAAYFAkxALOkACgkQNQqtfCuFneOy1gCglvWmnSCCWOp6GDh+uyPn5rUD -WQAAniscLEdid8p5rcFoVIxqkg/NpY6F -=p0Mi +iJwEAQECAAYFAkzBsXQACgkQIiMqcbOVdxSTkgP/XSzU0iCwhJ0w4P6H+81u127W +wE1h0zm9rxnDj3r8cU2t8lJsRpgg/amGT4mwy+uJT0l1JPw/3qELCK7rzrCOHGvT +BUUmEHGB60yBQtZQUV3lf6368/h7e0QBeIz0b+KhYf//Q3gb3tQl9BZU5Tq4BLSw +fwIGtQgGGH22rCqjr+o= +=5M8c -----END PGP SIGNATURE----- diff --git a/sci-biology/phyml/phyml-2.4.5-r1.ebuild b/sci-biology/phyml/phyml-2.4.5-r2.ebuild index d505663998af..6a3e21683547 100644 --- a/sci-biology/phyml/phyml-2.4.5-r1.ebuild +++ b/sci-biology/phyml/phyml-2.4.5-r2.ebuild @@ -1,31 +1,34 @@ # Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/phyml-2.4.5-r1.ebuild,v 1.2 2010/07/16 09:54:58 fauli Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/phyml-2.4.5-r2.ebuild,v 1.1 2010/10/22 15:44:40 xarthisius Exp $ + +EAPI=2 inherit toolchain-funcs +MY_P=${PN}_v${PV} + DESCRIPTION="Estimation of large phylogenies by maximum likelihood" HOMEPAGE="http://atgc.lirmm.fr/phyml/" -SRC_URI="http://www.lirmm.fr/~guindon/${PN}_v${PV}.tar.gz" +SRC_URI="http://www.lirmm.fr/~guindon/${MY_P}.tar.gz" LICENSE="GPL-2" SLOT="0" -KEYWORDS="~amd64 x86" +KEYWORDS="~amd64 ~x86" IUSE="" -DEPEND="" -RDEPEND="" +S=${WORKDIR}/${MY_P} -S="${WORKDIR}/${PN}_v${PV}" +src_prepare() { + sed -e 's/^hello !!!//' \ + -e 's/$(CC) -o/$(CC) $(LDFLAGS) -o/' \ + -i Makefile || die +} -src_unpack() { - unpack ${A} - sed -i -e 's/^hello !!!//' \ - -e 's/^CFLAGS =/#CFLAGS =/' \ - -e 's/^CC =/CC ='$(tc-getCC)'#/' \ - -e 's/-static//' "${S}/Makefile" +src_compile() { + emake -e CC="$(tc-getCC)" || die } src_install() { - dobin phyml + dobin phyml || die } diff --git a/sci-biology/phyml/phyml-2.4.5.ebuild b/sci-biology/phyml/phyml-2.4.5.ebuild index 8b1398ebd17a..929df30fb96b 100644 --- a/sci-biology/phyml/phyml-2.4.5.ebuild +++ b/sci-biology/phyml/phyml-2.4.5.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2008 Gentoo Foundation +# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/phyml-2.4.5.ebuild,v 1.2 2008/02/17 11:24:21 opfer Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phyml/phyml-2.4.5.ebuild,v 1.3 2010/10/22 15:44:40 xarthisius Exp $ DESCRIPTION="A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood." HOMEPAGE="http://atgc.lirmm.fr/phyml/" @@ -18,7 +18,7 @@ S=${WORKDIR}/${PN}_v${PV} src_unpack() { unpack ${A} - cd ${S} + cd "${S}" sed -i -e 's/^hello !!!//' -e 's/^CFLAGS =/#CFLAGS =/' -e 's/^CC =/#CC =/' Makefile } |