New version

Package-Manager: portage-2.0.51.22-r2

4 files changed, 70 insertions, 2 deletions

diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog
index 109233fc75c0..b2fb3785bae6 100644
--- a/sci-biology/emboss/ChangeLog
+++ b/sci-biology/emboss/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/emboss
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.14 2005/07/28 02:24:17 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.15 2005/08/06 23:01:45 ribosome Exp $
+
+*emboss-3.0.0 (06 Aug 2005)
+
+  06 Aug 2005; Olivier Fisette <ribosome@gentoo.org> +emboss-3.0.0.ebuild:
+  New version.
 
   28 Jul 2005; Olivier Fisette <ribosome@gentoo.org> -emboss-2.9.0.ebuild:
   Removed old version.
diff --git a/sci-biology/emboss/Manifest b/sci-biology/emboss/Manifest
index c8b16283cb1e..e9707e1c51f9 100644
--- a/sci-biology/emboss/Manifest
+++ b/sci-biology/emboss/Manifest
@@ -1,5 +1,7 @@
+MD5 dee893afbbf3cd39dc10fc38acd2d0fd emboss-3.0.0.ebuild 1822
 MD5 cc2652977a4b848bbefb00cd2d476c8c emboss-2.10.0.ebuild 1816
-MD5 ff6c01b2bdd0c7a9feca958bdb177d9e ChangeLog 4162
+MD5 e3c56e15e42ca61587f0a392719b16c4 ChangeLog 4282
 MD5 6051afb1f26bf343082490327784b958 metadata.xml 1013
+MD5 84fbde044d74a82c084fa22d5d59ae8e files/digest-emboss-3.0.0 66
 MD5 c518c2734b4848d0c68fa6a057c5ec5d files/digest-emboss-2.10.0 67
 MD5 ef2dfa3d13837026f59c0cf5f04f67c5 files/22emboss-r1 110
diff --git a/sci-biology/emboss/emboss-3.0.0.ebuild b/sci-biology/emboss/emboss-3.0.0.ebuild
new file mode 100644
index 000000000000..b19ae97209e8
--- /dev/null
+++ b/sci-biology/emboss/emboss-3.0.0.ebuild
@@ -0,0 +1,60 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-3.0.0.ebuild,v 1.1 2005/08/06 23:01:45 ribosome Exp $
+
+DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package"
+HOMEPAGE="http://emboss.sourceforge.net/"
+SRC_URI="ftp://${PN}.open-bio.org/pub/EMBOSS/EMBOSS-${PV}.tar.gz"
+LICENSE="GPL-2 LGPL-2"
+
+SLOT="0"
+KEYWORDS="~ppc ~ppc-macos ~ppc64 ~x86"
+IUSE="X png minimal"
+
+DEPEND="X? ( virtual/x11 )
+	png? (
+		sys-libs/zlib
+		media-libs/libpng
+		>=media-libs/gd-1.8
+	)
+	!minimal? (
+		sci-biology/primer3
+		sci-biology/clustalw
+	)"
+
+PDEPEND="!minimal? (
+		sci-biology/aaindex
+		sci-biology/cutg
+		sci-biology/prints
+		sci-biology/prosite
+		sci-biology/rebase
+		sci-biology/transfac
+	)"
+
+S=${WORKDIR}/EMBOSS-${PV}
+
+src_compile() {
+	EXTRA_CONF="--includedir=${D}/usr/include/emboss"
+	! use X && EXTRA_CONF="${EXTRA_CONF} --without-x"
+	! use png && EXTRA_CONF="${EXTRA_CONF} --without-pngdriver"
+
+	econf ${EXTRA_CONF} || die
+	# Do not install the JEMBOSS component (the --without-java configure option
+	# does not work). JEMBOSS will be available as a separate package.
+	sed -i -e 's/SUBDIRS = plplot ajax nucleus emboss test doc jemboss/SUBDIRS = plplot ajax nucleus emboss test doc/' Makefile || die
+	emake || die
+}
+
+src_install() {
+	einstall || die
+	dodoc AUTHORS ChangeLog FAQ NEWS README THANKS
+
+	# Install env file for setting libplplot and acd files path.
+	insinto /etc/env.d
+	newins ${FILESDIR}/22emboss-r1 22emboss
+
+	# Symlink preinstalled docs to /usr/share/doc.
+	dosym /usr/share/EMBOSS/doc/manuals /usr/share/doc/${PF}/manuals
+	dosym /usr/share/EMBOSS/doc/programs /usr/share/doc/${PF}/programs
+	dosym /usr/share/EMBOSS/doc/tutorials /usr/share/doc/${PF}/tutorials
+}
diff --git a/sci-biology/emboss/files/digest-emboss-3.0.0 b/sci-biology/emboss/files/digest-emboss-3.0.0
new file mode 100644
index 000000000000..5dfd3480a664
--- /dev/null
+++ b/sci-biology/emboss/files/digest-emboss-3.0.0
@@ -0,0 +1 @@
+MD5 fa72feded9ab9272e3e731c09f545dcc EMBOSS-3.0.0.tar.gz 16257908