New upstream version. Ebuild updated for EMBOSS 5.0.0.

Package-Manager: portage-2.1.2.9

4 files changed, 65 insertions, 5 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 085c5ba0b8e9..173ab2d25638 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.83 2007/05/22 00:51:52 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.84 2007/07/18 00:56:28 ribosome Exp $
+
+*rebase-707 (18 Jul 2007)
+
+  18 Jul 2007; Olivier Fisette <ribosome@gentoo.org> +rebase-707.ebuild:
+  New upstream version. Ebuild updated for EMBOSS 5.0.0.
 
 *rebase-705 (22 May 2007)
 
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index a86d60fc4a43..7f9aeea2f476 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,6 +1,7 @@
 DIST rebase-610.tar.bz2 183836 RMD160 f39b66acd481383f4b2dda932ad42d902bd23d34 SHA1 cd41f1e446139e0615179561b096b8f3ce5a9589 SHA256 f558655b399ab51cbfdf7bc3982025a7af66484528453360742bd45eac85b61d
 DIST rebase-704.tar.bz2 184563 RMD160 5aad3fa03f17bf211d6097e795f81610d9045bc3 SHA1 29c72e43beefdf7fccc7f7cad1bae161cb0727ec SHA256 8d9792b315f07a62684962b4af79495b8c12397c49769a023d4ba79e17b851dd
 DIST rebase-705.tar.bz2 184585 RMD160 777806e11081ac386ccad841af7b478676549a0c SHA1 29619bf187a4f7f5ade396551fd723ab25d8f4d0 SHA256 8cadb7f6825e4bf2375415208b1aa1eafc1b09ec02fb61bb9765a330bbf494fa
+DIST rebase-707.tar.bz2 184790 RMD160 1f6e7f2b7e9cdba5321162e5404159edb62a35b1 SHA1 8c4e9cc212ec34992797fddf0af9353e5673b758 SHA256 556015ce9eed286a9864a1f8d051447f0daf7c2e7141575330bd855b8451a7fe
 EBUILD rebase-610.ebuild 1334 RMD160 4001cc3bdf6cf840ce5c1f3eb811d679e0ebd9ff SHA1 b50fdc5f54c7a34406deb2bf8661a331abdb317b SHA256 02d029f6a31ff99794a9e8fb3d886d67eab470696c891f3996d2754be6b9f067
 MD5 d940265171168a8cb72cda1fc34bc007 rebase-610.ebuild 1334
 RMD160 4001cc3bdf6cf840ce5c1f3eb811d679e0ebd9ff rebase-610.ebuild 1334
@@ -13,10 +14,14 @@ EBUILD rebase-705.ebuild 1341 RMD160 01aea3ed638999c19bfa40d69d19d9635c42f89e SH
 MD5 3b800b14ea1fc796182ba264f70c86e0 rebase-705.ebuild 1341
 RMD160 01aea3ed638999c19bfa40d69d19d9635c42f89e rebase-705.ebuild 1341
 SHA256 067b878b9b952a07a52a92a6e0cd0462774b1db378bd539df0c17940d5f732df rebase-705.ebuild 1341
-MISC ChangeLog 11188 RMD160 2e54a6fe0f43e3010aa8782e43e4272909f0c5a3 SHA1 d6dfd1a4e55d4de9b1dce07a0569088aae7860a6 SHA256 799f79844b6afb2f44882bc4a2144281fe3b026269ecb57f45f5c8d4b3f65c7b
-MD5 92c779b01e4944bf985afc49fe590ff9 ChangeLog 11188
-RMD160 2e54a6fe0f43e3010aa8782e43e4272909f0c5a3 ChangeLog 11188
-SHA256 799f79844b6afb2f44882bc4a2144281fe3b026269ecb57f45f5c8d4b3f65c7b ChangeLog 11188
+EBUILD rebase-707.ebuild 1374 RMD160 f73633b25cb23b65b7dd74a8c7d3652aa079f253 SHA1 dc209063874821546dddd0d99ff70e47df93056b SHA256 c136eebce3fd4983d046a18baeb247c59273eeae7023d801f40bf788b7a5db76
+MD5 839857f6247ec5f8b558690b387c6f36 rebase-707.ebuild 1374
+RMD160 f73633b25cb23b65b7dd74a8c7d3652aa079f253 rebase-707.ebuild 1374
+SHA256 c136eebce3fd4983d046a18baeb247c59273eeae7023d801f40bf788b7a5db76 rebase-707.ebuild 1374
+MISC ChangeLog 11346 RMD160 7b08bfcc823d36ee660e36d0c7d433b47d2c458a SHA1 3526fc0ad335b87c758a9c571b720a0f6bcafd1a SHA256 c17b84e5edba744c95216bbcc106f3958d0cb0bdc447e10d4bfd012e54eaf94e
+MD5 039890789df735a5a0029b01cc578c7e ChangeLog 11346
+RMD160 7b08bfcc823d36ee660e36d0c7d433b47d2c458a ChangeLog 11346
+SHA256 c17b84e5edba744c95216bbcc106f3958d0cb0bdc447e10d4bfd012e54eaf94e ChangeLog 11346
 MISC metadata.xml 908 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 SHA1 32a6173a7ffa2900bb3ae75267684c3c4901ba1d SHA256 cbff81a8c24eb49cf76d5e9a61a86415d79c60e2e8a15594975273ba0d0f35af
 MD5 a463e92a7c6c7832dc446b533dd7b454 metadata.xml 908
 RMD160 c4dc96997a4563391f74a006ccecebd04b4ea8a3 metadata.xml 908
@@ -30,3 +35,6 @@ SHA256 fdb1a233b308bb0ba568df3ccf8317abd6ea9540b915cfe39b4194ca28e39fbd files/di
 MD5 d4795f93d216f0f2c150d46d7d6e1df5 files/digest-rebase-705 235
 RMD160 61277fcffcafe79d6f80f6830497205dc9b179b4 files/digest-rebase-705 235
 SHA256 7f994307879e00e6233fecea095935dd7d4e9f0aab060d73f537e0f09a3557d9 files/digest-rebase-705 235
+MD5 c38b09f56bcd0b88214f883b8507d23e files/digest-rebase-707 235
+RMD160 6d94e2e013aabdf9806e50e6950256af270e25e2 files/digest-rebase-707 235
+SHA256 8af718b0865101c0d7724259c9c85ea43e38f3880ad0e6ca77c59dcfc109ee6f files/digest-rebase-707 235
diff --git a/sci-biology/rebase/files/digest-rebase-707 b/sci-biology/rebase/files/digest-rebase-707
new file mode 100644
index 000000000000..3c7a000c0ff7
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-707
@@ -0,0 +1,3 @@
+MD5 dc3b473a035011031962003f5027fd39 rebase-707.tar.bz2 184790
+RMD160 1f6e7f2b7e9cdba5321162e5404159edb62a35b1 rebase-707.tar.bz2 184790
+SHA256 556015ce9eed286a9864a1f8d051447f0daf7c2e7141575330bd855b8451a7fe rebase-707.tar.bz2 184790
diff --git a/sci-biology/rebase/rebase-707.ebuild b/sci-biology/rebase/rebase-707.ebuild
new file mode 100644
index 000000000000..3602affd4b3b
--- /dev/null
+++ b/sci-biology/rebase/rebase-707.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-707.ebuild,v 1.1 2007/07/18 00:56:28 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+LICENSE="public-domain"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+# Minimal build keeps only the indexed files (if applicable) and the
+# documentation. The non-indexed database is not installed.
+IUSE="emboss minimal"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+
+DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
+				-protofile proto.${PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV} || die \
+				"Failed to install raw database."
+	fi
+	newdoc REBASE.DOC README || die "Failed to install documentation."
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup} || die \
+				"Failed to install EMBOSS data files."
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ \
+				|| die "Failed to install enzyme prototypes file."
+	fi
+}