Added dependency on io_lib for the Staden extensions. Dropping ~alpha, ~ia64 and ~sparc keywords (see bug #149577).

Package-Manager: portage-2.1.1

4 files changed, 74 insertions, 5 deletions

diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index cf54b1ed0d7d..14841a2a3269 100644
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-biology/bioperl
 # Copyright 2002-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.22 2006/09/13 01:41:58 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.23 2006/09/30 03:03:08 ribosome Exp $
+
+*bioperl-1.5.1-r1 (30 Sep 2006)
+
+  30 Sep 2006; Olivier Fisette <ribosome@gentoo.org>
+  +bioperl-1.5.1-r1.ebuild:
+  Added dependency on io_lib for the Staden extensions. Dropping ~alpha, ~ia64
+  and ~sparc keywords (see bug #149577).
 
 *bioperl-1.5.1 (13 Sep 2006)
 
diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index 9ff9f131262f..c33172a49e36 100644
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -4,14 +4,18 @@ EBUILD bioperl-1.4.ebuild 1175 RMD160 3a873722d4d53220920e4602c6bfa618ae3b9e79 S
 MD5 de99ea907d1aaae79d2ed082d3c5ffcc bioperl-1.4.ebuild 1175
 RMD160 3a873722d4d53220920e4602c6bfa618ae3b9e79 bioperl-1.4.ebuild 1175
 SHA256 dc8b5b849884b106630deedd2e5fe759f9b304e87b71ff3cb4c6b30a4a1dd560 bioperl-1.4.ebuild 1175
+EBUILD bioperl-1.5.1-r1.ebuild 1210 RMD160 d7a596ed022aa9377b6f4ba9cb0ebae57724d886 SHA1 dcc737fb35d81e7727b27f1244dcb49aef48ea9f SHA256 159535f469707fd51956e39cdc19456f381369f0aeeef7a8e4411c5dd57a6056
+MD5 928ca45cefebdebabc4914bda15260ac bioperl-1.5.1-r1.ebuild 1210
+RMD160 d7a596ed022aa9377b6f4ba9cb0ebae57724d886 bioperl-1.5.1-r1.ebuild 1210
+SHA256 159535f469707fd51956e39cdc19456f381369f0aeeef7a8e4411c5dd57a6056 bioperl-1.5.1-r1.ebuild 1210
 EBUILD bioperl-1.5.1.ebuild 1197 RMD160 b3a92d8eba1f2d3da639ee4a33b469619f40a0ef SHA1 d87b74cef60fdb9a8991d76efc9b8ac54c49b0a8 SHA256 2c8915c6ddc0726b277994a605ccf96082665f3968b4bb6a04348c700b7a82df
 MD5 fa4383b2076e0db29a7c0babebc2129b bioperl-1.5.1.ebuild 1197
 RMD160 b3a92d8eba1f2d3da639ee4a33b469619f40a0ef bioperl-1.5.1.ebuild 1197
 SHA256 2c8915c6ddc0726b277994a605ccf96082665f3968b4bb6a04348c700b7a82df bioperl-1.5.1.ebuild 1197
-MISC ChangeLog 5237 RMD160 45f121a54f97e27b229df8c9acb2314ced9874c9 SHA1 0f06a705640957bb273f893f08f2ebcd75b27db6 SHA256 9682b5d4b99260334ce52045726b41dc126d60c11c9156fb07b8633405c83281
-MD5 c4ecfac840042e32f78102e10d932291 ChangeLog 5237
-RMD160 45f121a54f97e27b229df8c9acb2314ced9874c9 ChangeLog 5237
-SHA256 9682b5d4b99260334ce52045726b41dc126d60c11c9156fb07b8633405c83281 ChangeLog 5237
+MISC ChangeLog 5472 RMD160 0d857d79bc30cd174b221ec6e72ecb64208e72e0 SHA1 395bf4222897297dbde3da9ee54f340ae9a892ba SHA256 ed1cd702cbdefebf985f371c79943bf20429df0168137492fe1f9b725b373aaa
+MD5 8955afdb42dbe0e5053bc00221fdd765 ChangeLog 5472
+RMD160 0d857d79bc30cd174b221ec6e72ecb64208e72e0 ChangeLog 5472
+SHA256 ed1cd702cbdefebf985f371c79943bf20429df0168137492fe1f9b725b373aaa ChangeLog 5472
 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f
 MD5 5f35ae4b4cb1cd144db7c7c093d3fd80 metadata.xml 262
 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 metadata.xml 262
@@ -22,3 +26,6 @@ SHA256 7f2cfe5a68d98c143ebc904b1c54de78d21218c225a93870256ea74c3d043fd1 files/di
 MD5 970b42591ef0cc641b037271250cb250 files/digest-bioperl-1.5.1 247
 RMD160 772c74652407b0ed6de23eb6b5c4a524134dacd2 files/digest-bioperl-1.5.1 247
 SHA256 92906734ae731b92c7acee45ed4a0e7827a47f6e4dc4a214e6049ac95734f1d3 files/digest-bioperl-1.5.1 247
+MD5 970b42591ef0cc641b037271250cb250 files/digest-bioperl-1.5.1-r1 247
+RMD160 772c74652407b0ed6de23eb6b5c4a524134dacd2 files/digest-bioperl-1.5.1-r1 247
+SHA256 92906734ae731b92c7acee45ed4a0e7827a47f6e4dc4a214e6049ac95734f1d3 files/digest-bioperl-1.5.1-r1 247
diff --git a/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild b/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild
new file mode 100644
index 000000000000..558b268d37f8
--- /dev/null
+++ b/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild
@@ -0,0 +1,52 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild,v 1.1 2006/09/30 03:03:09 ribosome Exp $
+
+inherit perl-module eutils
+
+DESCRIPTION="collection of tools for bioinformatics, genomics and life science research"
+HOMEPAGE="http://www.bioperl.org/"
+SRC_URI="http://www.bioperl.org/DIST/${P}.tar.bz2"
+
+LICENSE="Artistic GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86"
+IUSE="mysql gd"
+
+DEPEND="
+	perl-core/File-Temp
+	dev-perl/HTML-Parser
+	dev-perl/IO-String
+	dev-perl/IO-stringy
+	dev-perl/SOAP-Lite
+	perl-core/Storable
+	dev-perl/XML-DOM
+	dev-perl/XML-Parser
+	dev-perl/XML-Writer
+	dev-perl/XML-Twig
+	dev-perl/libxml-perl
+	dev-perl/libwww-perl
+	dev-perl/Graph
+	dev-perl/Text-Shellwords
+	>=sci-libs/io_lib-1.8.12b-r1
+	!=sci-libs/io_lib-1.9*
+	gd? (
+			>=dev-perl/GD-1.32-r1
+			dev-perl/SVG
+			dev-perl/GD-SVG
+		)
+	mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )"
+
+src_compile() {
+	yes "" | perl Makefile.PL ${myconf} \
+	         PREFIX=${D}/usr INSTALLDIRS=vendor
+}
+
+src_test() {
+	perl-module_src_test || die "Test failed"
+}
+
+src_install() {
+	mydoc="AUTHORS BUGS FAQ"
+	perl-module_src_install
+}
diff --git a/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1 b/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1
new file mode 100644
index 000000000000..299158ff7ff2
--- /dev/null
+++ b/sci-biology/bioperl/files/digest-bioperl-1.5.1-r1
@@ -0,0 +1,3 @@
+MD5 ba24f59a00c9919840a9b58f7fbd4d94 bioperl-1.5.1.tar.bz2 5538613
+RMD160 422bdd0dc17dd246ec1fc3ae6fe020705111892d bioperl-1.5.1.tar.bz2 5538613
+SHA256 696c8bd162bc79fa3c75eeb63bb42f8cbcbb4b72de4dcb3bec7ea7a293506f6c bioperl-1.5.1.tar.bz2 5538613