Fix sandbox violation, #407311

Package-Manager: portage-2.2.0_alpha90/cvs/Linux x86_64

5 files changed, 32 insertions, 12 deletions

diff --git a/sci-chemistry/coot/ChangeLog b/sci-chemistry/coot/ChangeLog
index 957c8f24cffd..4bda510b5d15 100644
--- a/sci-chemistry/coot/ChangeLog
+++ b/sci-chemistry/coot/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-chemistry/coot
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.51 2012/03/06 15:31:19 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.52 2012/03/07 19:33:39 jlec Exp $
+
+  07 Mar 2012; Justin Lecher <jlec@gentoo.org> coot-0.6.2.ebuild,
+  coot-0.6.2-r1.ebuild, coot-0.7_pre4040.ebuild:
+  Fix sandbox violation, #407311
 
 *coot-0.7_pre4040 (06 Mar 2012)
 
diff --git a/sci-chemistry/coot/Manifest b/sci-chemistry/coot/Manifest
index 4872f7e38622..e1c3abc5f139 100644
--- a/sci-chemistry/coot/Manifest
+++ b/sci-chemistry/coot/Manifest
@@ -18,15 +18,15 @@ DIST coot-0.6.2.tar.gz 13597123 RMD160 707eb3df47681a011f42874210b940329a748bc7
 DIST coot-0.7_pre4040.tar.xz 12318188 RMD160 cb92e4192ce8ede97b38791cd05e958205fca363 SHA1 b3b8c5260b6d67d401085756b0532dc76df0ffe6 SHA256 c1ca06199da2b1531cdff7ecc08b336b8d50d265b3c8ed9d37da656f6c4abf8a
 DIST greg-data-0.6.2.tar.gz 8044588 RMD160 065acee98384540d0c2ffaf2511dfd1aa400b11c SHA1 92cec24dab594d8024f41047af2bf6760e9e7d00 SHA256 c9fedf6e1fa60fda178753bbfb539671c274f64d4daca2b63ab49c59bd4c5856
 DIST greg-data-0.7_pre4040.tar.gz 8046573 RMD160 66219ccad8edf27088959a4d5e5a4d3d74452524 SHA1 2c9cf8edde7eaf3b623758022ccc1c29bcc9c1fc SHA256 c343ef4a5e4d70c5f1e5af70a7d26d8b66f579c11b208019256bf6478ddb309c
-EBUILD coot-0.6.2-r1.ebuild 4186 RMD160 3101a6d8f3c047875b2b6b14f98e5bf21f7847ca SHA1 c64c755a5ec3c6d7061273402b3cbd8d5ee18b67 SHA256 562ef504e61946a6d477a999461abae6cb989c6ad10dd6ed5a7f6aac75750452
-EBUILD coot-0.6.2.ebuild 4137 RMD160 9db72443a58fc996cc93870578beabec20364e78 SHA1 04ea15f0b045f8cb8d158fed84600b2ec6c2bb89 SHA256 7e1b4547c5c8eedb081991b30c3dbc2fc1abd29e73a193fcc3027f2b93445319
-EBUILD coot-0.7_pre4040.ebuild 4288 RMD160 1bdd561f17bd9acd78200a58447587d7488fd75f SHA1 e81352cfc0145eb3b84ebb6b2886b7236c7e998c SHA256 c580ecab1be49107716d3aa0bbeb23e796c96e884a42f76481dfd40380eecda9
-MISC ChangeLog 7802 RMD160 465cbeff59c40d30eb3f7d1ecdad5c0972432309 SHA1 b0890d996ca5de7718b8dc25840bfd493879372c SHA256 5c17a4f43dd5424a2d20c170e4e6647631e66720ba6bacdd36fd75ba336db195
+EBUILD coot-0.6.2-r1.ebuild 4423 RMD160 da5157564ae8086cb18664f2d60c85ec6bd3366e SHA1 3e0c931aa38d18ba46539c1c3d5abfc09df2e414 SHA256 7164cf3fe4b9c35cbeee7f2f9893fbf2e1db9688d67345e10c6f52044b9c4292
+EBUILD coot-0.6.2.ebuild 4320 RMD160 49e73e0107e6d2c89fdf4efbd2c5aecb830d5cd2 SHA1 dc68f9b3ffd7333bcc961e7474487ff68d55526b SHA256 fd788d6aa77b5e6611ffcd4a0821a21c845a39f9e897d71427ba0a9e58fcc087
+EBUILD coot-0.7_pre4040.ebuild 4477 RMD160 55601d93fce5fcf910ed6cbf0cf51e6855195844 SHA1 1dfe0b25c9b3ec3adbdbed573ec8e30bee0f8529 SHA256 cbc01e21ce216b09f241a6ea54a13c375c538f0363639f896b59fe52900f63d1
+MISC ChangeLog 7951 RMD160 e1dc51dc984828455ce5be6f47cdcf30ba44d051 SHA1 a19a1fc61da31518a8d96b3a2bc7efe6895b8417 SHA256 58af055f6c3cca77abcc5b195498d902efaf08efe8999f07b0cc1a26e56d8df8
 MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8
 -----BEGIN PGP SIGNATURE-----
 Version: GnuPG v2.0.18 (GNU/Linux)
 
-iEYEAREKAAYFAk9WLc0ACgkQgAnW8HDreRbdSACeP9dH2j5qstpfClfhYJD0gcXn
-nTQAn11xBZFCXMvxFVZ83fQ3Gur0w/E/
-=Z3Fo
+iEYEAREKAAYFAk9XuBoACgkQgAnW8HDreRboPACdHfAF29uBpUDzJ83LaQozip52
+yPkAoJ9SJlpDChGnc69z86kRNzvl3BCF
+=qzHc
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/coot/coot-0.6.2-r1.ebuild b/sci-chemistry/coot/coot-0.6.2-r1.ebuild
index be31a70d7af9..5d608187faed 100644
--- a/sci-chemistry/coot/coot-0.6.2-r1.ebuild
+++ b/sci-chemistry/coot/coot-0.6.2-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2-r1.ebuild,v 1.3 2012/03/06 15:31:19 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2-r1.ebuild,v 1.4 2012/03/07 19:33:39 jlec Exp $
 
 EAPI=3
 
@@ -88,6 +88,14 @@ PATCHES=(
 	"${FILESDIR}"/${PV}-libpng15.patch
 	)
 
+src_prepare() {
+	sed \
+		-e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
+		-i configure.in || die
+
+	autotools-utils_src_prepare
+}
+
 src_configure() {
 	# All the --with's are used to activate various parts.
 	# Yes, this is broken behavior.
diff --git a/sci-chemistry/coot/coot-0.6.2.ebuild b/sci-chemistry/coot/coot-0.6.2.ebuild
index bd9066f1e5f6..427b9d35a441 100644
--- a/sci-chemistry/coot/coot-0.6.2.ebuild
+++ b/sci-chemistry/coot/coot-0.6.2.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2.ebuild,v 1.10 2011/10/08 16:22:59 phajdan.jr Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.6.2.ebuild,v 1.11 2012/03/07 19:33:39 jlec Exp $
 
 EAPI=3
 
@@ -85,6 +85,10 @@ PATCHES=(
 	)
 
 src_prepare() {
+	sed \
+		-e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
+		-i configure.in || die
+
 	base_src_prepare
 
 	eautoreconf
diff --git a/sci-chemistry/coot/coot-0.7_pre4040.ebuild b/sci-chemistry/coot/coot-0.7_pre4040.ebuild
index 519ac27bad9f..2a7e3fccbfb3 100644
--- a/sci-chemistry/coot/coot-0.7_pre4040.ebuild
+++ b/sci-chemistry/coot/coot-0.7_pre4040.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.7_pre4040.ebuild,v 1.1 2012/03/06 15:31:19 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.7_pre4040.ebuild,v 1.2 2012/03/07 19:33:39 jlec Exp $
 
 EAPI=4
 
@@ -90,6 +90,10 @@ PATCHES=(
 	)
 
 src_prepare() {
+	sed \
+		-e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-$(PYTHON)-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
+		-i configure.in || die
+
 	autotools-utils_src_prepare
 
 	cat >> src/svn-revision.cc <<- EOF