[sci-chemistry/gromacs] Version bump. Clean up old versions. Thanks to Christoph Junghans

Package-Manager: portage-2.2.0_alpha5_p2/cvs/Linux x86_64

4 files changed, 0 insertions, 68 deletions

diff --git a/sci-chemistry/gromacs/files/gromacs-4.0.4-configure-gfortran.patch b/sci-chemistry/gromacs/files/gromacs-4.0.4-configure-gfortran.patch
deleted file mode 100644
index c330fcaf0cdc..000000000000
--- a/sci-chemistry/gromacs/files/gromacs-4.0.4-configure-gfortran.patch
+++ /dev/null
@@ -1,17 +0,0 @@
-diff -Naur gromacs-4.0.4-orig/configure.ac gromacs-4.0.4/configure.ac
---- gromacs-4.0.4-orig/configure.ac	2009-04-09 21:12:31.000000000 +0200
-+++ gromacs-4.0.4/configure.ac	2009-04-09 21:13:38.000000000 +0200
-@@ -320,11 +320,11 @@
- case "${host_cpu}-${host_os}" in
-   alpha*-linux*)
-     cc_names="ccc cc gcc"
--    f77_names="fort f77 g77"
-+    f77_names="fort f77 g77 gfortran"
-     ;;
-   *) 
-     cc_names="cc icc xlc gcc"
--    f77_names="f77 ifort xlf xlf77 cf77 fl32 g77 fort77 f90 xlf90 pgf77 cf77 fort fort77 pgf90"
-+    f77_names="f77 ifort xlf xlf77 cf77 fl32 g77 fort77 f90 xlf90 pgf77 cf77 fort fort77 pgf90 gfortran"
-     ;;
- esac
- # the (non-mpi) c compiler, which is also used for programs executed during build stage
diff --git a/sci-chemistry/gromacs/files/gromacs-4.0.4-sparc-cyclecounter.patch b/sci-chemistry/gromacs/files/gromacs-4.0.4-sparc-cyclecounter.patch
deleted file mode 100644
index f174aef2769d..000000000000
--- a/sci-chemistry/gromacs/files/gromacs-4.0.4-sparc-cyclecounter.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff -Naur gromacs-4.0.4-orig/include/gmx_cyclecounter.h gromacs-4.0.4/include/gmx_cyclecounter.h
---- gromacs-4.0.4-orig/include/gmx_cyclecounter.h	2009-05-09 18:46:02.000000000 +0200
-+++ gromacs-4.0.4/include/gmx_cyclecounter.h	2009-05-09 18:56:50.000000000 +0200
-@@ -408,7 +408,7 @@
- static __inline__ gmx_cycles_t gmx_cycles_read(void)
- { 
-     /* gcc inline assembly on sparc v9 */
--    ticks ret;
-+    unsigned long ret;
-     __asm__("rd %%tick, %0" : "=r" (ret));
-     return ret;  
- }
diff --git a/sci-chemistry/gromacs/files/gromacs-4.0.9999-ccache.patch b/sci-chemistry/gromacs/files/gromacs-4.0.9999-ccache.patch
deleted file mode 100644
index 68b6a1e66e1d..000000000000
--- a/sci-chemistry/gromacs/files/gromacs-4.0.9999-ccache.patch
+++ /dev/null
@@ -1,20 +0,0 @@
-cc is not cache by ccache (bug #302048), work around that
-
-diff --git a/configure.ac b/configure.ac
-index 3100101..db9d0b6 100644
---- a/configure.ac
-+++ b/configure.ac
-@@ -288,11 +288,11 @@ AC_DEFINE_UNQUOTED([BUILD_MACHINE],["`uname -srm`"],[Hardware and OS version for
- # normally we use the default compiler, but on alpha/linux we try the compaq ones first
- case "${host_cpu}-${host_os}" in
-   alpha*-linux*)
--    cc_names="ccc cc gcc"
-+    cc_names="ccc gcc"
-     f77_names="fort f77 g77"
-     ;;
-   *) 
--    cc_names="cc icc xlc gcc"
-+    cc_names="icc xlc gcc"
-     f77_names="f77 ifort xlf xlf77 cf77 fl32 g77 fort77 f90 xlf90 pgf77 cf77 fort fort77 pgf90"
-     ;;
- esac
diff --git a/sci-chemistry/gromacs/files/gromacs-4.0.9999-configure-gfortran.patch b/sci-chemistry/gromacs/files/gromacs-4.0.9999-configure-gfortran.patch
deleted file mode 100644
index 1bf19ddf532e..000000000000
--- a/sci-chemistry/gromacs/files/gromacs-4.0.9999-configure-gfortran.patch
+++ /dev/null
@@ -1,19 +0,0 @@
-enable gfortan as fortan compiler
-
-diff -Naur gromacs-4.0.4-orig/configure.ac gromacs-4.0.4/configure.ac
---- gromacs-4.0.4-orig/configure.ac	2009-04-09 21:12:31.000000000 +0200
-+++ gromacs-4.0.4/configure.ac	2009-04-09 21:13:38.000000000 +0200
-@@ -320,11 +320,11 @@
- case "${host_cpu}-${host_os}" in
-   alpha*-linux*)
-     cc_names="ccc gcc"
--    f77_names="fort f77 g77"
-+    f77_names="fort f77 g77 gfortran"
-     ;;
-   *) 
-     cc_names="icc xlc gcc"
--    f77_names="f77 ifort xlf xlf77 cf77 fl32 g77 fort77 f90 xlf90 pgf77 cf77 fort fort77 pgf90"
-+    f77_names="f77 ifort xlf xlf77 cf77 fl32 g77 fort77 f90 xlf90 pgf77 cf77 fort fort77 pgf90 gfortran"
-     ;;
- esac
- # the (non-mpi) c compiler, which is also used for programs executed during build stage