Splitted mosflm from ccp4

Package-Manager: portage-2.2_rc62/cvs/Linux x86_64

6 files changed, 143 insertions, 0 deletions

diff --git a/sci-chemistry/mosflm/ChangeLog b/sci-chemistry/mosflm/ChangeLog
new file mode 100644
index 000000000000..36923849432e
--- /dev/null
+++ b/sci-chemistry/mosflm/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-chemistry/mosflm
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mosflm/ChangeLog,v 1.1 2010/02/06 22:59:27 jlec Exp $
+
+*mosflm-7.0.6 (06 Feb 2010)
+
+  06 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org>
+  +files/7.0.6-Makefile.patch, +files/7.0.6-parallel.patch,
+  +mosflm-7.0.6.ebuild, +metadata.xml:
+  Splitted mosflm from ccp4
+
diff --git a/sci-chemistry/mosflm/Manifest b/sci-chemistry/mosflm/Manifest
new file mode 100644
index 000000000000..ba7f5edcb326
--- /dev/null
+++ b/sci-chemistry/mosflm/Manifest
@@ -0,0 +1,16 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX 7.0.6-Makefile.patch 352 RMD160 69fd182574615b90bbeb1b633885006051e81683 SHA1 f2964f48bb4bf89880fe47f0af1bff090c59092e SHA256 d5b62b78ab3b89d36fad10e31cd5e5e8087d5dc4976ad03ef1995bea08e27ac7
+AUX 7.0.6-parallel.patch 654 RMD160 f28cdb670c3ecfcc4ec194dd44136182fbf9cf7f SHA1 bf6742b58d6e9ce67e76f38e81aeb64f88fae729 SHA256 c821e031a039502364c4ae151fd64886a6a33153e5c746d55838a99050d18c60
+DIST mosflm706.tgz 3468405 RMD160 fb0b7e51ed9845d4d17aa804cb1424e5aa0f24b8 SHA1 f9a771c3991c7ad3125a7e39d5c59b3049784f4f SHA256 5e26a49fd37749a14e7a1d1e867c1c0333db3bbcc01376fb7a516d4a67b1ebb0
+EBUILD mosflm-7.0.6.ebuild 1678 RMD160 f79080064ca29f9e976ed2a98570c38d399f1f15 SHA1 439b5dea75c91d62a7133a795e8d201efff19ee5 SHA256 d2289f305d35c9ea952bb1584fe09460703ba8bfea3e4b90a1daec019d8daf6b
+MISC ChangeLog 422 RMD160 e5e8584f3cb08b10066d03112bdb759e38fc7ee1 SHA1 d8898f3734494d100027e4289cd8ffcf97f5e2df SHA256 99d9bb18076afed1aa4f58e08fb80fcbc9358f7f9ffc036a39d850b6b760a66c
+MISC metadata.xml 216 RMD160 04a6fc4e2160b439296b52aa97d5b7d83af75508 SHA1 9561c9e6eada6aac9b503407917900529ce703e9 SHA256 24f5c205c2655ef27138c8aa087701626f5b4c666229c9ef7fe814e63ea2e776
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.14 (GNU/Linux)
+
+iEYEARECAAYFAktt9FUACgkQgAnW8HDreRbitgCfXnCHD/5sj5cWEx5kMijdAGqd
+hHUAoI3CXomMXob1s8YVKx5fKJxCI36i
+=uOun
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/mosflm/files/7.0.6-Makefile.patch b/sci-chemistry/mosflm/files/7.0.6-Makefile.patch
new file mode 100644
index 000000000000..a35232f6e8c0
--- /dev/null
+++ b/sci-chemistry/mosflm/files/7.0.6-Makefile.patch
@@ -0,0 +1,13 @@
+--- Makefile	2008-10-17 16:15:30.000000000 +0200
++++ Makefile.new	2009-02-20 21:52:34.000000000 +0100
+@@ -22,7 +22,7 @@
+ CBFLIBS = cbf/lib/libcbf.a
+ JPGLIBS = jpg/libjpeg.a
+ 
+-all:	$(DPSLIBS) $(CBFLIBS) $(JPGLIBS)
+-	cd mosflm ; make
++all:	dpslibs cbflibs
++	+make -C mosflm
+ 
+ ##########################################################################
+
diff --git a/sci-chemistry/mosflm/files/7.0.6-parallel.patch b/sci-chemistry/mosflm/files/7.0.6-parallel.patch
new file mode 100644
index 000000000000..f735c7ce5cf7
--- /dev/null
+++ b/sci-chemistry/mosflm/files/7.0.6-parallel.patch
@@ -0,0 +1,28 @@
+--- cbf/Makefile	2009-08-31 09:35:06.000000000 +0200
++++ cbf/Makefile.new	2009-08-31 10:44:46.000000000 +0200
+@@ -362,6 +362,8 @@
+              $(EXAMPLES)/img.h               \
+              $(INCLUDE)/md5.h
+ 
++OBJ = $(subst .c,.o,$(SOURCE))
++
+ #
+ # Compile the library and examples
+ #
+@@ -379,11 +381,14 @@
+ $(LIB):
+ 	mkdir $(LIB)
+ 
++
++.c.o: $(SOURCE) $(HEADERS)
++	$(CC) $(CFLAGS) $(INCLUDES) $(WARNINGS) -c $<
++
+ #
+ # CBF library
+ #
+-$(LIB)/libcbf.a: $(SOURCE) $(HEADERS) $(COMMONDEP)
+-	$(CC) $(CFLAGS) $(INCLUDES) $(WARNINGS) -c $(SOURCE)
++$(LIB)/libcbf.a: $(OBJ) $(COMMONDEP)
+ 	$(AR) cr $@ *.o
+ 	rm *.o
+ 	if [ -f $(RANLIB) ]; then $(RANLIB) $@ ; fi
diff --git a/sci-chemistry/mosflm/metadata.xml b/sci-chemistry/mosflm/metadata.xml
new file mode 100644
index 000000000000..c6856dc7f2cf
--- /dev/null
+++ b/sci-chemistry/mosflm/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+</maintainer>
+</pkgmetadata>
diff --git a/sci-chemistry/mosflm/mosflm-7.0.6.ebuild b/sci-chemistry/mosflm/mosflm-7.0.6.ebuild
new file mode 100644
index 000000000000..78f5226fd368
--- /dev/null
+++ b/sci-chemistry/mosflm/mosflm-7.0.6.ebuild
@@ -0,0 +1,67 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/mosflm/mosflm-7.0.6.ebuild,v 1.1 2010/02/06 22:59:27 jlec Exp $
+
+EAPI="3"
+
+inherit fortran toolchain-funcs versionator eutils
+
+MY_PV="$(delete_all_version_separators)"
+MY_P="${PN}${MY_PV}"
+
+FORTRAN="g77 gfortran ifc"
+
+DESCRIPTION="A program for integrating single crystal diffraction data from area detectors"
+HOMEPAGE="http://www.mrc-lmb.cam.ac.uk/harry/mosflm/"
+SRC_URI="${HOMEPAGE}ver${MY_PV}/build-it-yourself/${MY_P}.tgz"
+
+LICENSE="ccp4"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	app-shells/tcsh
+	media-libs/jpeg
+	sci-libs/ccp4-libs
+	sys-libs/ncurses
+	x11-libs/libxdl_view"
+DEPEND="${RDEPEND}"
+# Needs older version as current, perhaps we can fix that next release
+#	sci-libs/cbflib
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	rm src/dps/peak_search/dps_peaksearch
+# See DEPEND
+#	sed -e "s:../cbf/lib/libcbf.a:/usr/$(get_libdir)/libcbf.a:g" \
+	sed -e "s:../jpg/libjpeg.a:${EPREFIX}/usr/$(get_libdir)/libjpeg.a:g" \
+		-i ${PN}/Makefile || die
+
+	epatch \
+		"${FILESDIR}/${PV}"-Makefile.patch \
+		"${FILESDIR}/${PV}"-parallel.patch
+}
+
+src_compile() {
+	emake \
+		MOSHOME="${S}" \
+		DPS="${S}" \
+		FC=${FORTRANC} \
+		FLINK=${FORTRANC} \
+		CC=$(tc-getCC) \
+		AR_FLAGS=vru \
+		MOSLIBS='-lccp4f -lccp4c -lxdl_view -lcurses -lXt -lmmdb -lccif -lstdc++' \
+		MCFLAGS="-O0 -fno-second-underscore" \
+		MOSFLAGS="${FFLAGS} -fno-second-underscore" \
+		FFLAGS="${FFLAGS:- -O2}" \
+		CFLAGS="${CFLAGS}" \
+		MOSCFLAGS="${CFLAGS}" \
+		LFLAGS="${LDFLAGS}" \
+		|| die "emake failed"
+}
+
+src_install() {
+	dobin bin/ipmosflm || die
+}