New addition, written by me

Package-Manager: portage-2.2.0_alpha26/cvs/Linux x86_64

5 files changed, 115 insertions, 0 deletions

diff --git a/sci-chemistry/p3d/ChangeLog b/sci-chemistry/p3d/ChangeLog
new file mode 100644
index 000000000000..81026442e648
--- /dev/null
+++ b/sci-chemistry/p3d/ChangeLog
@@ -0,0 +1,11 @@
+# ChangeLog for sci-chemistry/p3d
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/p3d/ChangeLog,v 1.1 2011/03/09 10:34:14 jlec Exp $
+
+*p3d-9999 (09 Mar 2011)
+*p3d-0.4.3.0 (09 Mar 2011)
+
+  09 Mar 2011; Justin Lecher <jlec@gentoo.org> +p3d-0.4.3.0.ebuild,
+  +p3d-9999.ebuild, +metadata.xml:
+  New addition, written by me
+
diff --git a/sci-chemistry/p3d/Manifest b/sci-chemistry/p3d/Manifest
new file mode 100644
index 000000000000..d544ed2c989e
--- /dev/null
+++ b/sci-chemistry/p3d/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+DIST fu-p3d-0.4.3-0-gb8b9a75.tar.gz 7213577 RMD160 2a251097bf7f83b27e519b20e4110fe330b2b6a3 SHA1 ced099dcaa28517c6095c1153f3a19bb6c78494c SHA256 b968eb37c0d27ad1f4f46f8a942fb2b62fbcdb50b31a1e66875e2cdc036a9932
+EBUILD p3d-0.4.3.0.ebuild 801 RMD160 d78289508a21b3fb567caeb84fa42937aba6fad8 SHA1 67a261e297701339667f5ec7ccbe7e2eeb8fe4aa SHA256 6a6615c538068bdd4e4cb59743ef1eccaba22d045cd6a234bada9b2cae043833
+EBUILD p3d-9999.ebuild 720 RMD160 0f1147919f3c71f6ce5eb545456cc3c96e9efef8 SHA1 4800dcfa8dfe5135094f4983dd246f3e253fd545 SHA256 8e3a5b6bb2984ce0b251a403d748a686a15df63d276c76fb57f34e2c7df7529a
+MISC ChangeLog 391 RMD160 d3d12788ee39837616277f559170474351975f9a SHA1 e7369f9be33f53638582258122b137f40e5e0f46 SHA256 91864dc2994ce9757bbb4caaa7e8598a4c870093259af5ba18f5c21d7af11d33
+MISC metadata.xml 1111 RMD160 b9cef3a070a2a4df9d8827e7dabcec89b0812ca6 SHA1 2a02f4b691e39756104450e05c31d00dba3dce94 SHA256 4c1ec1718b9a843cd12a09a3379958ed0eee0c305ae68f956e38e9eba3f0d0ad
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.17 (GNU/Linux)
+
+iEYEARECAAYFAk13V6sACgkQgAnW8HDreRZdXgCeIcaP2JzPbu8EzCX93YUyujYA
+vSYAmQGkgTOAAQ+QA/O2EaK8SlSdbPbA
+=olXE
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/p3d/metadata.xml b/sci-chemistry/p3d/metadata.xml
new file mode 100644
index 000000000000..9a0f5eff3224
--- /dev/null
+++ b/sci-chemistry/p3d/metadata.xml
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-chemistry</herd>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+</maintainer>
+<longdescription>
+p3d was developed in order to offer a Python module that is powerful and fast,
+yet intuitive to use. The simplicity of p3d is due to the usage of object 
+oriented programming (i.e. atoms are treated as vectors), the implementation 
+of a query parser that translates queries readable by humans into a combination
+of algebra set operations the fact that no additional Python packages are 
+necessary. The speed is due to the usage of a binary space partitioning (BSP)
+tree which allows very fast queries in 3D (Henry et al. 1980). The additional 
+synergy is obtained by the flexible combination of both speed and complexity in
+the queries to the structural data. The combination of these factors makes p3d
+the optimal module to rapidly develop new and powerful bioinformatic tools that
+follow the Python philosophy of making the source code readable.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/p3d/p3d-0.4.3.0.ebuild b/sci-chemistry/p3d/p3d-0.4.3.0.ebuild
new file mode 100644
index 000000000000..97fd92c82958
--- /dev/null
+++ b/sci-chemistry/p3d/p3d-0.4.3.0.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/p3d/p3d-0.4.3.0.ebuild,v 1.1 2011/03/09 10:34:14 jlec Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+
+inherit distutils versionator
+
+MY_P="${PN}-$(replace_version_separator 3 -)"
+GITHUB_ID="gb8b9a75"
+
+DESCRIPTION="Python module for structural bioinformatics"
+HOMEPAGE="http://p3d.fufezan.net"
+SRC_URI="https://download.github.com/fu-${MY_P}-${GITHUB_ID}.tar.gz"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="GPL-3"
+IUSE="examples"
+
+src_prepare() {
+	mv fu* ${P}
+	distutils_src_prepare
+}
+
+src_install() {
+	distutils_src_install
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r pdbs exampleScripts
+	fi
+}
diff --git a/sci-chemistry/p3d/p3d-9999.ebuild b/sci-chemistry/p3d/p3d-9999.ebuild
new file mode 100644
index 000000000000..6675a9d46995
--- /dev/null
+++ b/sci-chemistry/p3d/p3d-9999.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/p3d/p3d-9999.ebuild,v 1.1 2011/03/09 10:34:14 jlec Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+
+inherit git distutils versionator
+
+MY_P="${PN}-$(replace_version_separator 3 -)"
+GITHUB_ID="gb8b9a75"
+
+DESCRIPTION="Python module for structural bioinformatics"
+HOMEPAGE="http://p3d.fufezan.net"
+SRC_URI=""
+EGIT_REPO_URI="git://github.com/fu/p3d.git"
+
+SLOT="0"
+KEYWORDS=""
+LICENSE="GPL-3"
+IUSE="examples"
+
+S="${WORKDIR}"/${PN}
+
+src_install() {
+	distutils_src_install
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r pdbs exampleScripts
+	fi
+}