Add apbs-0.5.1 which includes many bugfixes and new features, masking old version.

Package-Manager: portage-2.1.2.9

5 files changed, 93 insertions, 11 deletions

diff --git a/sci-chemistry/apbs/ChangeLog b/sci-chemistry/apbs/ChangeLog
index 962249d756b6..7534080f2cb0 100644
--- a/sci-chemistry/apbs/ChangeLog
+++ b/sci-chemistry/apbs/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-chemistry/apbs
 # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.13 2007/02/24 18:39:08 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.14 2007/07/18 17:37:48 je_fro Exp $
+
+  18 Jul 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog:
+  Add apbs-0.5.1 which includes many bugfixes and new features.
 
   24 Feb 2007; Jeff Gardner <je_fro@gentoo.org> apbs-0.5.0.ebuild:
   Cleanup apbs-0.5.0.ebuild.
diff --git a/sci-chemistry/apbs/Manifest b/sci-chemistry/apbs/Manifest
index 8120d1005a46..4a1398de93cc 100644
--- a/sci-chemistry/apbs/Manifest
+++ b/sci-chemistry/apbs/Manifest
@@ -8,18 +8,23 @@ RMD160 88138dc27c2fa17e558dc3a5c8c41e52bd2f0309 files/apbs-gcc4-gentoo.patch 108
 SHA256 9077f4ffc41a2af28eed4193a2e56d20b668e2bc280ca2740d3a8803e28c48d6 files/apbs-gcc4-gentoo.patch 1080
 DIST apbs-0.4.0.tar.gz 6490858 RMD160 259c89efed2296eb20af1f8076adc767ef35228c SHA1 f7a5aaefebb545b06f66cb11f229f959060e6c3f SHA256 d1f6637e10b3051e6f618abaa14063f8f9bafbbbad75058645866b606d708acc
 DIST apbs-0.5.0-source-2.tar.gz 10171621 RMD160 31a00f89052cc32d0fdf3272c214f2145ac62067 SHA1 4d3376a62169e3965a2d3b49a2b4b1014bf7721e SHA256 5f99cc6141d34800cf9e93e0e23215b3f740f6e208318698e7011602e1630a08
-EBUILD apbs-0.4.0.ebuild 2282 RMD160 2b10b99d394a8e4e2f243a4521688789a9d76325 SHA1 af8751311171eb86cb37461b27653851da590a02 SHA256 46eb3013a2cb7ddb5461756be8232c3a0642b7661497be246b5ab05b6e9470a9
-MD5 366055488b92629516412ca18f39b178 apbs-0.4.0.ebuild 2282
-RMD160 2b10b99d394a8e4e2f243a4521688789a9d76325 apbs-0.4.0.ebuild 2282
-SHA256 46eb3013a2cb7ddb5461756be8232c3a0642b7661497be246b5ab05b6e9470a9 apbs-0.4.0.ebuild 2282
+DIST apbs-0.5.1-source.tgz 10952600 RMD160 d738f88252193dff64ca692d895d1359445d5eda SHA1 50d88392f4cf2cadf1627828aeffeb165ef49f0e SHA256 28828a56d474d644f1e0940b9f232c92ccf2bc123ae402bd70976cf018564903
+EBUILD apbs-0.4.0.ebuild 2263 RMD160 b287665785fcdff940d94d005876c72a27955ba9 SHA1 d856c8cb505b4f3ef5153e8f9d8b1f8bf89a7965 SHA256 94798fbf5df5b03159c99cb04bd37583a26ad3fc3175995b940dc1bccd284b86
+MD5 03bc4e9a44abebb169a267aecbc4bd4e apbs-0.4.0.ebuild 2263
+RMD160 b287665785fcdff940d94d005876c72a27955ba9 apbs-0.4.0.ebuild 2263
+SHA256 94798fbf5df5b03159c99cb04bd37583a26ad3fc3175995b940dc1bccd284b86 apbs-0.4.0.ebuild 2263
 EBUILD apbs-0.5.0.ebuild 1757 RMD160 19f32781d4ee7dcc4d33d7f031c7ee65b434d2dc SHA1 1da670491ad35339d77d25595c0c2f849915726b SHA256 88d84d01c9a12a9bcd3f5c389fb03e817de84b90a8d2e076de4e6c0c00d49aa6
 MD5 a4147a49a6e42a04656373dc991ebaba apbs-0.5.0.ebuild 1757
 RMD160 19f32781d4ee7dcc4d33d7f031c7ee65b434d2dc apbs-0.5.0.ebuild 1757
 SHA256 88d84d01c9a12a9bcd3f5c389fb03e817de84b90a8d2e076de4e6c0c00d49aa6 apbs-0.5.0.ebuild 1757
-MISC ChangeLog 1882 RMD160 776a0432dad7c4faeb8b0db569486816fae59c8a SHA1 99e614716f580f3fdb614b4a2a0b032617d0ae94 SHA256 06401ba2b7c87675b7d665e096292bdb9fa8d09ac386a3c364ea70880a3153ea
-MD5 09d16bf98b9053d79463ed752f6f7e67 ChangeLog 1882
-RMD160 776a0432dad7c4faeb8b0db569486816fae59c8a ChangeLog 1882
-SHA256 06401ba2b7c87675b7d665e096292bdb9fa8d09ac386a3c364ea70880a3153ea ChangeLog 1882
+EBUILD apbs-0.5.1.ebuild 1752 RMD160 bc5a3eb8ee7e58eca861dd1925675aa53fa769c1 SHA1 6fbad898f518f6c08492178d4bec98fe82ec4734 SHA256 aaae3b73a567d0ff8ee36900a12864990fe71cedd55529df2d9e4cbb6053c5ea
+MD5 85caafffbe070f9a3058e690a7fa3b8a apbs-0.5.1.ebuild 1752
+RMD160 bc5a3eb8ee7e58eca861dd1925675aa53fa769c1 apbs-0.5.1.ebuild 1752
+SHA256 aaae3b73a567d0ff8ee36900a12864990fe71cedd55529df2d9e4cbb6053c5ea apbs-0.5.1.ebuild 1752
+MISC ChangeLog 2006 RMD160 4f2e34b1dd6d6b8196a74ed245ced03a2d9e339a SHA1 7ab6ed9618275ab870cf4b4382a87182f19d09a8 SHA256 118c741676476fdcee23819a71ccfccf862f448f8c67d01bfb4012952575e862
+MD5 b52cbb2e24587e178ac1df937e0f80e4 ChangeLog 2006
+RMD160 4f2e34b1dd6d6b8196a74ed245ced03a2d9e339a ChangeLog 2006
+SHA256 118c741676476fdcee23819a71ccfccf862f448f8c67d01bfb4012952575e862 ChangeLog 2006
 MISC metadata.xml 282 RMD160 539a53475b01291eadb86c8c53a0fbc02b4a34d4 SHA1 7f42dcea44641b8a77ab9644791344ec6ed6c327 SHA256 3c1785eb4ab63774ed3a6b1bddd602ef24cd6795f690bb3289d5a980bca06349
 MD5 cf7436fe44a27481d1001082eb06326e metadata.xml 282
 RMD160 539a53475b01291eadb86c8c53a0fbc02b4a34d4 metadata.xml 282
@@ -30,3 +35,6 @@ SHA256 b0c6ba75ae65cac80987484dab6a0c0bb889d01b852c12dd7c4e59e6062f19f9 files/di
 MD5 2e793d5244707356fd7f9ff50ea767c5 files/digest-apbs-0.5.0 265
 RMD160 9aee8d28472d0c967b4eaf0b9db7b7a3c4c40d04 files/digest-apbs-0.5.0 265
 SHA256 dbab309772ba0dcaa2605863678f47c1db4575bb72fb20d31aa4ccee8a7e37ef files/digest-apbs-0.5.0 265
+MD5 baf186ecdae5b6f53e92fce3e51ff822 files/digest-apbs-0.5.1 250
+RMD160 7f91d6c185f188b6e4235628d487d240e019e1de files/digest-apbs-0.5.1 250
+SHA256 c3ab4dc58b993753de30910de0b32e22d4aaba2770847c17dfaa85b2936affc9 files/digest-apbs-0.5.1 250
diff --git a/sci-chemistry/apbs/apbs-0.4.0.ebuild b/sci-chemistry/apbs/apbs-0.4.0.ebuild
index f41089450ca6..6eddf850efa9 100644
--- a/sci-chemistry/apbs/apbs-0.4.0.ebuild
+++ b/sci-chemistry/apbs/apbs-0.4.0.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2006 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-0.4.0.ebuild,v 1.6 2007/06/26 02:39:25 mr_bones_ Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-0.4.0.ebuild,v 1.7 2007/07/18 17:37:48 je_fro Exp $
 
 inherit eutils fortran
 
@@ -11,7 +11,7 @@ SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
 
 SLOT="0"
 IUSE="blas mpi"
-KEYWORDS="~ppc ~x86 ~amd64"
+KEYWORDS=""
 
 DEPEND="blas? ( virtual/blas )
 		sys-libs/readline
diff --git a/sci-chemistry/apbs/apbs-0.5.1.ebuild b/sci-chemistry/apbs/apbs-0.5.1.ebuild
new file mode 100644
index 000000000000..0580109c9490
--- /dev/null
+++ b/sci-chemistry/apbs/apbs-0.5.1.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-0.5.1.ebuild,v 1.1 2007/07/18 17:37:48 je_fro Exp $
+
+inherit eutils fortran
+
+MY_P="${P}-source"
+S="${WORKDIR}"/"${MY_P}"
+
+DESCRIPTION=" Software for evaluating the electrostatic properties of nanoscale biomolecular systems"
+LICENSE="GPL-2"
+HOMEPAGE="http://agave.wustl.edu/apbs/"
+SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tgz"
+
+SLOT="0"
+IUSE="blas mpi"
+KEYWORDS="~ppc ~x86 ~amd64"
+
+DEPEND="blas? ( virtual/blas )
+		sys-libs/readline
+		mpi? ( virtual/mpi )"
+
+FORTRAN="g77 gfortran"
+
+pkg_setup() {
+	# It is important that you use the same compiler to compile
+	# APBS that you used when compiling MPI.
+	fortran_pkg_setup
+}
+
+src_compile() {
+
+	# use blas
+	use blas && local myconf="--with-blas=-lblas"
+
+	use mpi && myconf="${myconf} --with-mpiinc=/usr/include"
+
+	econf ${myconf} || die "configure failed"
+
+	# build
+	make DESTDIR=${D} || die "make failed"
+}
+
+src_install() {
+
+	# install apbs binary
+	dobin bin/apbs || die "failed to install apbs binary"
+
+	# remove useless files and install docs
+	find ./examples -name 'test.sh' -exec rm -f {} \; || \
+		die "Failed to remove test.sh files"
+	find ./examples -name 'Makefile*' -exec rm -f {} \; || \
+		die "Failed to remove Makefiles"
+	find ./tools -name 'Makefile*' -exec rm -f {} \; || \
+		die "Failed to remove Makefiles"
+
+	dohtml -r doc/index.html doc/programmer doc/tutorial \
+		doc/user-guide doc/license || \
+			die "Failed to install html docs"
+
+	insinto /usr/share/doc/${PF}/examples
+	doins -r examples/* || \
+		die "Failed to install examples"
+
+	insinto /usr/share/${PF}/tools
+	doins -r tools/* || die "failed to install tools"
+
+}
diff --git a/sci-chemistry/apbs/files/digest-apbs-0.5.1 b/sci-chemistry/apbs/files/digest-apbs-0.5.1
new file mode 100644
index 000000000000..ec26e8aa7277
--- /dev/null
+++ b/sci-chemistry/apbs/files/digest-apbs-0.5.1
@@ -0,0 +1,3 @@
+MD5 e0619222398c499de8f4457c455bdaf4 apbs-0.5.1-source.tgz 10952600
+RMD160 d738f88252193dff64ca692d895d1359445d5eda apbs-0.5.1-source.tgz 10952600
+SHA256 28828a56d474d644f1e0940b9f232c92ccf2bc123ae402bd70976cf018564903 apbs-0.5.1-source.tgz 10952600