Version bump

Package-Manager: portage-2.1.10.41/cvs/Linux x86_64
author: Sebastien Fabbro <bicatali@gentoo.org> 2012-01-20 05:54:40 +0000
committer: Sebastien Fabbro <bicatali@gentoo.org> 2012-01-20 05:54:40 +0000
commit: b3ab498cb2be2d8c528647e3a344d4187b8afef3 (patch)
tree: c51cb8dd62b3764d5a081c84b73f4c37326f825e /sci-libs
parent: Depend on >=requests-0.9.1 (diff)
download: historical-b3ab498cb2be2d8c528647e3a344d4187b8afef3.tar.gz
historical-b3ab498cb2be2d8c528647e3a344d4187b8afef3.tar.bz2
historical-b3ab498cb2be2d8c528647e3a344d4187b8afef3.zip
24 files changed, 462 insertions, 419 deletions
diff --git a/sci-libs/amd/ChangeLog b/sci-libs/amd/ChangeLog
index 567680a7f6bc..06fd6180f2db 100644
--- a/sci-libs/amd/ChangeLog
+++ b/sci-libs/amd/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/amd
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/amd/ChangeLog,v 1.28 2011/06/21 15:43:02 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/amd/ChangeLog,v 1.29 2012/01/20 05:51:11 bicatali Exp $
+
+*amd-2.2.3 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org> +amd-2.2.3.ebuild:
+  Version bump
 
   21 Jun 2011; Justin Lecher <jlec@gentoo.org> amd-2.2.0.ebuild,
   amd-2.2.1.ebuild, amd-2.2.2.ebuild:
diff --git a/sci-libs/amd/amd-2.2.3.ebuild b/sci-libs/amd/amd-2.2.3.ebuild
new file mode 100644
index 000000000000..5b48523b48cb
--- /dev/null
+++ b/sci-libs/amd/amd-2.2.3.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/amd/amd-2.2.3.ebuild,v 1.1 2012/01/20 05:51:11 bicatali Exp $
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+inherit autotools-utils fortran-2
+
+MY_PN=AMD
+
+DESCRIPTION="Library to order a sparse matrix prior to Cholesky factorization"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/amd"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="doc static-libs"
+
+RDEPEND="virtual/fortran
+	sci-libs/ufconfig"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}/${MY_PN}"
+
+PATCHES=( "${FILESDIR}"/${PN}-2.2.0-autotools.patch )
+DOCS=( README.txt Doc/ChangeLog )
+
+src_install() {
+	autotools-utils_src_install
+	use doc && doins Doc/AMD_UserGuide.pdf
+}
diff --git a/sci-libs/btf/ChangeLog b/sci-libs/btf/ChangeLog
index a52b7ff63a16..131516963a20 100644
--- a/sci-libs/btf/ChangeLog
+++ b/sci-libs/btf/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/btf
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/btf/ChangeLog,v 1.5 2011/06/26 09:20:15 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/btf/ChangeLog,v 1.6 2012/01/20 05:51:46 bicatali Exp $
+
+*btf-1.1.3 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org> +btf-1.1.3.ebuild:
+  Version bump
 
   26 Jun 2011; Justin Lecher <jlec@gentoo.org> btf-1.0.1.ebuild,
   btf-1.1.0.ebuild, btf-1.1.2.ebuild, metadata.xml:
diff --git a/sci-libs/btf/btf-1.1.3.ebuild b/sci-libs/btf/btf-1.1.3.ebuild
new file mode 100644
index 000000000000..bc15e831d232
--- /dev/null
+++ b/sci-libs/btf/btf-1.1.3.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/btf/btf-1.1.3.ebuild,v 1.1 2012/01/20 05:51:46 bicatali Exp $
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+inherit autotools-utils
+
+MY_PN=BTF
+
+DESCRIPTION="Algorithm for matrix permutation into block triangular form"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/btf/"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="static-libs"
+
+DEPEND="sci-libs/ufconfig"
+RDEPEND=""
+
+DOCS=( README.txt Doc/ChangeLog )
+PATCHES=( "${FILESDIR}"/${PN}-1.0.1-autotools.patch )
+
+S="${WORKDIR}/${MY_PN}"
diff --git a/sci-libs/camd/ChangeLog b/sci-libs/camd/ChangeLog
index e26743854e27..73a6e35a9f30 100644
--- a/sci-libs/camd/ChangeLog
+++ b/sci-libs/camd/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-libs/camd
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/camd/ChangeLog,v 1.20 2011/07/28 20:33:19 bicatali Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/camd/ChangeLog,v 1.21 2012/01/20 05:48:09 bicatali Exp $
+
+*camd-2.2.3 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org>
+  files/camd-2.2.0-autotools.patch, +camd-2.2.3.ebuild:
+  Version bump
 
   28 Jul 2011; Sébastien Fabbro <bicatali@gentoo.org> camd-2.2.2.ebuild:
   Fixed for wrong doc file (bug #376183) and added static-libs flag
diff --git a/sci-libs/camd/camd-2.2.3.ebuild b/sci-libs/camd/camd-2.2.3.ebuild
new file mode 100644
index 000000000000..3dc9d8b73f6e
--- /dev/null
+++ b/sci-libs/camd/camd-2.2.3.ebuild
@@ -0,0 +1,32 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/camd/camd-2.2.3.ebuild,v 1.1 2012/01/20 05:48:09 bicatali Exp $
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+inherit autotools-utils
+
+MY_PN=CAMD
+
+DESCRIPTION="Library to order a sparse matrix prior to Cholesky factorization"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/camd/"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
+
+LICENSE="LGPL-2"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="doc static-libs"
+
+DEPEND="sci-libs/ufconfig"
+RDEPEND="${DEPEND}"
+
+PATCHES=( "${FILESDIR}"/${PN}-2.2.0-autotools.patch )
+DOCS=( README.txt Doc/ChangeLog )
+
+S="${WORKDIR}/${MY_PN}"
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dodoc Doc/CAMD_UserGuide.pdf
+}
diff --git a/sci-libs/camd/files/camd-2.2.0-autotools.patch b/sci-libs/camd/files/camd-2.2.0-autotools.patch
index 0de6b6b45b4f..d112a5f17169 100644
--- a/sci-libs/camd/files/camd-2.2.0-autotools.patch
+++ b/sci-libs/camd/files/camd-2.2.0-autotools.patch
@@ -35,7 +35,7 @@
 +	@for i in $(check_PROGRAMS); do \
 +		echo "Testing $$i"; \
 +		./$$i > my_$$i.out; \
-+		if ! diff $$i.out my_$$i.out; then \
++		if ! diff $(srcdir)/$$i.out my_$$i.out; then \
 +			echo "Test $$i failed!"; \
 +			exit 1; \
 +		fi \
diff --git a/sci-libs/cholmod/ChangeLog b/sci-libs/cholmod/ChangeLog
index 57673a1c54b1..1e90c211f6ae 100644
--- a/sci-libs/cholmod/ChangeLog
+++ b/sci-libs/cholmod/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/cholmod
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cholmod/ChangeLog,v 1.25 2011/02/23 19:53:33 bicatali Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cholmod/ChangeLog,v 1.26 2012/01/20 05:52:25 bicatali Exp $
+
+*cholmod-1.7.4 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org> +cholmod-1.7.4.ebuild:
+  Version bump
 
 *cholmod-1.7.3 (23 Feb 2011)
 
diff --git a/sci-libs/cholmod/cholmod-1.7.4.ebuild b/sci-libs/cholmod/cholmod-1.7.4.ebuild
new file mode 100644
index 000000000000..aa08ddbf8fe8
--- /dev/null
+++ b/sci-libs/cholmod/cholmod-1.7.4.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cholmod/cholmod-1.7.4.ebuild,v 1.1 2012/01/20 05:52:25 bicatali Exp $
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+inherit eutils autotools autotools-utils
+
+MY_PN=CHOLMOD
+PPV=1.7.0
+
+DESCRIPTION="Sparse Cholesky factorization and update/downdate library"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cholmod"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz
+	mirror://gentoo/${PN}-${PPV}-autotools.patch.bz2"
+
+LICENSE="LGPL-2.1 GPL-2"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="doc metis minimal static-libs +supernodal"
+
+RDEPEND="supernodal? ( virtual/lapack )
+	sci-libs/amd
+	sci-libs/colamd
+	metis? ( sci-libs/camd
+			 sci-libs/ccolamd
+			 || ( sci-libs/metis sci-libs/parmetis ) )"
+
+DEPEND="${RDEPEND}
+	supernodal? ( dev-util/pkgconfig )
+	metis? ( dev-util/pkgconfig )"
+
+DOCS=( README.txt Doc/ChangeLog )
+
+S="${WORKDIR}/${MY_PN}"
+
+src_prepare() {
+	cd "${WORKDIR}"
+	epatch "${WORKDIR}"/${PN}-${PPV}-autotools.patch
+	cd "${S}"
+	# We need to take care of cholmod.h here as well depending on
+	# the USE flags, otherwise the installed file will reference
+	# headers that we may not have included.
+	if use minimal; then
+		sed -i '/^#define CHOLMOD_/{N;
+		s:\(#define\) \(CHOLMOD_CONFIG_H\)\n:\1 \2\n\1 NMODIFY 1\n\1 NMATRIXOPS 1\n:}' \
+		Include/cholmod_config.h
+	fi
+
+	if ! use supernodal; then
+		sed -i '/^#define CHOLMOD_/{N;
+		s:\(#define\) \(CHOLMOD_CONFIG_H\)\n:\1 \2\n\1 NSUPERNODAL 1\n:}' \
+		Include/cholmod_config.h
+	fi
+
+	if ! use metis; then
+		sed -i '/^#define CHOLMOD_/{N;
+		s:\(#define\) \(CHOLMOD_CONFIG_H\)\n:\1 \2\n\1 NPARTITION 1\n:}' \
+		Include/cholmod_config.h
+	fi
+	eautoreconf
+}
+
+src_configure() {
+	local lapack_libs=no
+	local blas_libs=no
+	if use supernodal; then
+		blas_libs=$(pkg-config --libs blas)
+		lapack_libs=$(pkg-config --libs lapack)
+	fi
+	myeconfargs+=(
+		--with-blas="${blas_libs}"
+		--with-lapack="${lapack_libs}"
+		$(use_enable supernodal mod-supernodal)
+		$(use_enable !minimal mod-modify)
+		$(use_enable !minimal mod-matrixops)
+		$(use_enable metis mod-partition)
+	)
+	autotools-utils_src_configure
+}
+
+src_test() {
+	if ! use supernodal || ! use metis || use minimal; then
+		ewarn "According to your useflags, some modules were not built on"
+		ewarn "purpose. This can cause the tests included with Cholmod"
+		ewarn "to fail. Rebuild with USE=\"supernodal metis -minimal\""
+		ewarn "if you care."
+	fi
+	autotools-utils_src_test -C Demo test
+}
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dodoc Doc/UserGuide.pdf
+}
diff --git a/sci-libs/cxsparse/ChangeLog b/sci-libs/cxsparse/ChangeLog
index e72310af2d13..c60cedafdbb9 100644
--- a/sci-libs/cxsparse/ChangeLog
+++ b/sci-libs/cxsparse/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/cxsparse
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cxsparse/ChangeLog,v 1.20 2011/06/26 14:39:26 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cxsparse/ChangeLog,v 1.21 2012/01/20 05:49:19 bicatali Exp $
+
+*cxsparse-2.2.6 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org> +cxsparse-2.2.6.ebuild:
+  Version bump
 
   26 Jun 2011; Justin Lecher <jlec@gentoo.org> cxsparse-2.2.1.ebuild,
   cxsparse-2.2.3.ebuild, cxsparse-2.2.5.ebuild, metadata.xml:
diff --git a/sci-libs/cxsparse/cxsparse-2.2.6.ebuild b/sci-libs/cxsparse/cxsparse-2.2.6.ebuild
new file mode 100644
index 000000000000..c8c4a2ad6df0
--- /dev/null
+++ b/sci-libs/cxsparse/cxsparse-2.2.6.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cxsparse/cxsparse-2.2.6.ebuild,v 1.1 2012/01/20 05:49:19 bicatali Exp $
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+inherit autotools-utils
+
+MY_PN=CXSparse
+
+DESCRIPTION="Extended sparse matrix package."
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/CXSparse/"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${MY_PN}/versions/${MY_PN}-${PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="static-libs"
+
+DEPEND="sci-libs/ufconfig"
+RDEPEND=""
+
+DOCS=( README.txt Doc/ChangeLog )
+PATCHES=( "${FILESDIR}"/${PN}-2.2.2-autotools.patch )
+
+S="${WORKDIR}/${MY_PN}"
diff --git a/sci-libs/klu/ChangeLog b/sci-libs/klu/ChangeLog
index 78dc2aaa4437..f12dbc9e988a 100644
--- a/sci-libs/klu/ChangeLog
+++ b/sci-libs/klu/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/klu
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/klu/ChangeLog,v 1.6 2011/08/07 00:54:52 bicatali Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/klu/ChangeLog,v 1.7 2012/01/20 05:52:52 bicatali Exp $
+
+*klu-1.1.3 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org> +klu-1.1.3.ebuild:
+  Version bump
 
 *klu-1.1.2 (07 Aug 2011)
 
diff --git a/sci-libs/klu/klu-1.1.3.ebuild b/sci-libs/klu/klu-1.1.3.ebuild
new file mode 100644
index 000000000000..2c8f119200b6
--- /dev/null
+++ b/sci-libs/klu/klu-1.1.3.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/klu/klu-1.1.3.ebuild,v 1.1 2012/01/20 05:52:52 bicatali Exp $
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+inherit autotools-utils
+
+MY_PN=KLU
+
+DESCRIPTION="Sparse LU factorization for circuit simulation"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/klu/"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc static-libs"
+
+DEPEND="sci-libs/amd
+	sci-libs/btf
+	sci-libs/colamd"
+RDEPEND="${DEPEND}"
+
+DOCS=( README.txt Doc/ChangeLog )
+PATCHES=( "${FILESDIR}"/${PN}-1.0.1-autotools.patch )
+
+S="${WORKDIR}/${MY_PN}"
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dodoc Doc/*.pdf
+}
diff --git a/sci-libs/ldl/ChangeLog b/sci-libs/ldl/ChangeLog
index 64a21fc36b41..b28fc587fca3 100644
--- a/sci-libs/ldl/ChangeLog
+++ b/sci-libs/ldl/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-libs/ldl
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/ldl/ChangeLog,v 1.4 2011/03/22 18:10:40 bicatali Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/ldl/ChangeLog,v 1.5 2012/01/20 05:53:22 bicatali Exp $
+
+*ldl-2.0.4 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org>
+  -files/ldl-2.0.1-autotools.patch, +ldl-2.0.4.ebuild:
+  Version bump
 
 *ldl-2.0.3-r1 (22 Mar 2011)
 
diff --git a/sci-libs/ldl/files/ldl-2.0.1-autotools.patch b/sci-libs/ldl/files/ldl-2.0.1-autotools.patch
deleted file mode 100644
index d76524c000d4..000000000000
--- a/sci-libs/ldl/files/ldl-2.0.1-autotools.patch
+++ /dev/null
@@ -1,63 +0,0 @@
---- configure.ac 	1970-01-01 01:00:00.000000000 +0100
-+++ configure.ac	2008-01-30 12:45:53.174426797 +0000
-@@ -0,0 +1,10 @@
-+# -*- Autoconf -*-
-+AC_PREREQ(2.59)
-+AC_INIT(ldl, 2.0.1, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_PROG_INSTALL
-+AC_PROG_LIBTOOL
-+AC_CHECK_LIB(m, sqrt)
-+AC_CHECK_HEADERS(UFconfig.h)
-+AC_CONFIG_FILES([Makefile Source/Makefile Demo/Makefile])
-+AC_OUTPUT
---- Makefile.am 	1970-01-01 01:00:00.000000000 +0100
-+++ Makefile.am	2008-01-30 15:49:41.835515468 +0000
-@@ -0,0 +1,4 @@
-+SUBDIRS = Source Demo
-+EXTRA_DIST = README.txt
-+include_HEADERS = Include/ldl.h
-+
---- Source/Makefile.am 	1970-01-01 01:00:00.000000000 +0100
-+++ Source/Makefile.am	2008-01-30 12:49:25.858546974 +0000
-@@ -0,0 +1,10 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+
-+lib_LTLIBRARIES = libldl.la
-+noinst_LTLIBRARIES = libldli.la libldll.la
-+libldli_la_SOURCES = $(LDLSRC)
-+libldli_la_CPPFLAGS = $(AM_CPPFLAGS)
-+libldll_la_SOURCES = $(LDLSRC)
-+libldll_la_CPPFLAGS = $(AM_CPPFLAGS) -DLDL_LONG
-+libldl_la_SOURCES = 
-+libldl_la_LIBADD = libldll.la libldli.la
---- Demo/Makefile.am 	1970-01-01 01:00:00.000000000 +0100
-+++ Demo/Makefile.am	2008-01-30 15:43:45.603214946 +0000
-@@ -0,0 +1,27 @@
-+LDADD = $(top_builddir)/Source/libldl.la -lm
-+AM_CPPFLAGS =  -I$(top_srcdir)/Include
-+check_PROGRAMS = ldlsimple ldllsimple ldlmain ldllmain ldlamd ldllamd
-+
-+ldlmain_SOURCES = ldlmain.c
-+ldllmain_SOURCES = ldlmain.c
-+ldllmain_CPPFLAGS = $(AM_CPPFLAGS) -DLDL_LONG
-+
-+ldlsimple_SOURCES = ldlsimple.c
-+ldllsimple_SOURCES = ldlsimple.c
-+ldllsimple_CPPFLAGS = $(AM_CPPFLAGS) -DLDL_LONG
-+
-+ldlamd_SOURCES = ldlamd.c
-+ldllamd_CPPFLAGS =  $(AM_CPPFLAGS) -DUSE_AMD
-+ldllamd_SOURCES = ldlamd.c
-+ldllamd_CPPFLAGS =  $(AM_CPPFLAGS) -DUSE_AMD -DLDL_LONG
-+ldllamd_LDADD = $(LDADD) -lamd
-+
-+check-local: $(check_PROGRAMS)
-+	@for i in $(check_PROGRAMS); do \
-+		echo "Testing $$i"; \
-+		./$$i > my_$$i.out; \
-+		if ! diff $$i.out my_$$i.out; then \
-+			echo "Testing $$i failed"; \
-+			exit 1; \
-+		fi \
-+	done;
diff --git a/sci-libs/ldl/ldl-2.0.4.ebuild b/sci-libs/ldl/ldl-2.0.4.ebuild
new file mode 100644
index 000000000000..1c6b1a284794
--- /dev/null
+++ b/sci-libs/ldl/ldl-2.0.4.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/ldl/ldl-2.0.4.ebuild,v 1.1 2012/01/20 05:53:22 bicatali Exp $
+
+EAPI=4
+
+AUTOTOOLS_AUTORECONF=yes
+inherit autotools-utils
+
+MY_PN=LDL
+
+DESCRIPTION="Simple but educational LDL^T matrix factorization algorithm"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/ldl"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc static-libs"
+DEPEND="sci-libs/ufconfig"
+RDEPEND=""
+
+PATCHES=( "${FILESDIR}"/${PN}-2.0.3-autotools.patch )
+DOCS=( README.txt Doc/ChangeLog )
+
+S="${WORKDIR}/${MY_PN}"
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dodoc Doc/ldl_userguide.pdf
+}
diff --git a/sci-libs/spqr/ChangeLog b/sci-libs/spqr/ChangeLog
index eb96d29a34ce..bd45257bbcdb 100644
--- a/sci-libs/spqr/ChangeLog
+++ b/sci-libs/spqr/ChangeLog
@@ -1,6 +1,14 @@
 # ChangeLog for sci-libs/spqr
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/spqr/ChangeLog,v 1.7 2011/08/07 03:47:10 bicatali Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/spqr/ChangeLog,v 1.8 2012/01/20 05:53:50 bicatali Exp $
+
+*spqr-1.2.3 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org>
+  -files/1.2.2-autotools.patch, -files/spqr-1.1.0-autotools.patch,
+  -files/spqr-1.1.0-gcc43.patch, -spqr-1.2.1.ebuild, -spqr-1.2.2.ebuild,
+  +spqr-1.2.3.ebuild, +files/spqr-1.2.3-autotools.patch:
+  Version bump
 
 *spqr-1.2.2 (07 Aug 2011)
 
diff --git a/sci-libs/spqr/files/spqr-1.1.0-autotools.patch b/sci-libs/spqr/files/spqr-1.1.0-autotools.patch
deleted file mode 100644
index 02e7f89f7395..000000000000
--- a/sci-libs/spqr/files/spqr-1.1.0-autotools.patch
+++ /dev/null
@@ -1,208 +0,0 @@
-diff -Naur SPQR.orig/Demo/Makefile.am SPQR/Demo/Makefile.am
---- SPQR.orig/Demo/Makefile.am	1969-12-31 19:00:00.000000000 -0500
-+++ SPQR/Demo/Makefile.am	2009-10-22 23:42:08.000000000 -0400
-@@ -0,0 +1,78 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+
-+LDADD = $(top_builddir)/Source/libspqr.la \
-+	$(CHOLMOD_LIBS) $(AMD_LIBS) $(CAMD_LIBS) \
-+	$(COLAMD_LIBS) $(CCOLAMD_LIBS) \
-+	$(METIS_LIBS) $(BLAS_LIBS) $(LAPACK_LIBS) $(TBB_LIBS)
-+
-+check_PROGRAMS = \
-+	qrsimple qrsimplec \
-+	qrdemo qrdemoc
-+
-+qrsimple_SOURCES = qrsimple.cpp
-+qrsimplec = qrsimplec.c
-+qrsimplec_CFLAGS = -ansi
-+qrdemo_SOURCES = qrdemo.cpp
-+qrdemoc_SOURCES = qrdemoc.c
-+qrdemoc_CFLAGS = -ansi
-+
-+
-+check-local: $(check_PROGRAMS)
-+	./qrsimple < ../Matrix/ash219.mtx || exit 1
-+	./qrsimplec < ../Matrix/ash219.mtx || exit 1
-+	./qrsimple < ../Matrix/west0067.mtx || exit 1
-+	./qrsimplec < ../Matrix/west0067.mtx || exit 1
-+	./qrdemo < ../Matrix/a2.mtx || exit 1
-+	./qrdemo < ../Matrix/r2.mtx || exit 1
-+	./qrdemo < ../Matrix/a04.mtx || exit 1
-+	./qrdemo < ../Matrix/a2.mtx || exit 1
-+	./qrdemo < ../Matrix/west0067.mtx || exit 1
-+	./qrdemo < ../Matrix/c2.mtx || exit 1
-+	./qrdemo < ../Matrix/a0.mtx || exit 1
-+	./qrdemo < ../Matrix/lfat5b.mtx || exit 1
-+	./qrdemo < ../Matrix/bfwa62.mtx || exit 1
-+	./qrdemo < ../Matrix/LFAT5.mtx || exit 1
-+	./qrdemo < ../Matrix/b1_ss.mtx || exit 1
-+	./qrdemo < ../Matrix/bcspwr01.mtx || exit 1
-+	./qrdemo < ../Matrix/lpi_galenet.mtx || exit 1
-+	./qrdemo < ../Matrix/lpi_itest6.mtx || exit 1
-+	./qrdemo < ../Matrix/ash219.mtx || exit 1
-+	./qrdemo < ../Matrix/a4.mtx || exit 1
-+	./qrdemo < ../Matrix/s32.mtx || exit 1
-+	./qrdemo < ../Matrix/c32.mtx || exit 1
-+	./qrdemo < ../Matrix/lp_share1b.mtx || exit 1
-+	./qrdemo < ../Matrix/a1.mtx || exit 1
-+	./qrdemo < ../Matrix/GD06_theory.mtx || exit 1
-+	./qrdemo < ../Matrix/GD01_b.mtx || exit 1
-+	./qrdemo < ../Matrix/Tina_AskCal_perm.mtx || exit 1
-+	./qrdemo < ../Matrix/Tina_AskCal.mtx || exit 1
-+	./qrdemo < ../Matrix/GD98_a.mtx || exit 1
-+	./qrdemo < ../Matrix/Ragusa16.mtx || exit 1
-+	./qrdemo < ../Matrix/young1c.mtx || exit 1
-+	./qrdemoc < ../Matrix/a2.mtx || exit 1
-+	./qrdemoc < ../Matrix/r2.mtx || exit 1
-+	./qrdemoc < ../Matrix/a04.mtx || exit 1
-+	./qrdemoc < ../Matrix/a2.mtx || exit 1
-+	./qrdemoc < ../Matrix/west0067.mtx || exit 1
-+	./qrdemoc < ../Matrix/c2.mtx || exit 1
-+	./qrdemoc < ../Matrix/a0.mtx || exit 1
-+	./qrdemoc < ../Matrix/lfat5b.mtx || exit 1
-+	./qrdemoc < ../Matrix/bfwa62.mtx || exit 1
-+	./qrdemoc < ../Matrix/LFAT5.mtx || exit 1
-+	./qrdemoc < ../Matrix/b1_ss.mtx || exit 1
-+	./qrdemoc < ../Matrix/bcspwr01.mtx || exit 1
-+	./qrdemoc < ../Matrix/lpi_galenet.mtx || exit 1
-+	./qrdemoc < ../Matrix/lpi_itest6.mtx || exit 1
-+	./qrdemoc < ../Matrix/ash219.mtx || exit 1
-+	./qrdemoc < ../Matrix/a4.mtx || exit 1
-+	./qrdemoc < ../Matrix/s32.mtx || exit 1
-+	./qrdemoc < ../Matrix/c32.mtx || exit 1
-+	./qrdemoc < ../Matrix/lp_share1b.mtx || exit 1
-+	./qrdemoc < ../Matrix/a1.mtx || exit 1
-+	./qrdemoc < ../Matrix/GD06_theory.mtx || exit 1
-+	./qrdemoc < ../Matrix/GD01_b.mtx || exit 1
-+	./qrdemoc < ../Matrix/Tina_AskCal_perm.mtx || exit 1
-+	./qrdemoc < ../Matrix/Tina_AskCal.mtx || exit 1
-+	./qrdemoc < ../Matrix/GD98_a.mtx || exit 1
-+	./qrdemoc < ../Matrix/Ragusa16.mtx || exit 1
-+	./qrdemoc < ../Matrix/young1c.mtx || exit 1
-diff -Naur SPQR.orig/Include/Makefile.am SPQR/Include/Makefile.am
---- SPQR.orig/Include/Makefile.am	1969-12-31 19:00:00.000000000 -0500
-+++ SPQR/Include/Makefile.am	2009-10-22 23:42:08.000000000 -0400
-@@ -0,0 +1,5 @@
-+include_HEADERS = \
-+	spqr.hpp \
-+	SuiteSparseQR_C.h \
-+	SuiteSparseQR_definitions.h \
-+	SuiteSparseQR.hpp
-diff -Naur SPQR.orig/Makefile.am SPQR/Makefile.am
---- SPQR.orig/Makefile.am	1969-12-31 19:00:00.000000000 -0500
-+++ SPQR/Makefile.am	2009-10-22 23:42:08.000000000 -0400
-@@ -0,0 +1,2 @@
-+SUBDIRS = Include Source Demo
-+EXTRA_DIST = README.txt
-diff -Naur SPQR.orig/Source/Makefile.am SPQR/Source/Makefile.am
---- SPQR.orig/Source/Makefile.am	1969-12-31 19:00:00.000000000 -0500
-+++ SPQR/Source/Makefile.am	2009-10-22 23:43:03.000000000 -0400
-@@ -0,0 +1,48 @@
-+AM_CPPFLAGS=-I$(top_srcdir)/Include
-+
-+lib_LTLIBRARIES = libspqr.la
-+
-+libspqr_la_SOURCES = \
-+    spqr_rmap.cpp \
-+    SuiteSparseQR_C.cpp \
-+    SuiteSparseQR_expert.cpp \
-+    spqr_parallel.cpp \
-+    spqr_kernel.cpp \
-+    spqr_analyze.cpp \
-+    spqr_assemble.cpp \
-+    spqr_cpack.cpp \
-+    spqr_csize.cpp \
-+    spqr_fcsize.cpp \
-+    spqr_debug.cpp \
-+    spqr_front.cpp \
-+    spqr_factorize.cpp \
-+    spqr_freenum.cpp \
-+    spqr_freesym.cpp \
-+    spqr_freefac.cpp \
-+    spqr_fsize.cpp \
-+    spqr_maxcolnorm.cpp \
-+    spqr_rconvert.cpp \
-+    spqr_rcount.cpp \
-+    spqr_rhpack.cpp \
-+    spqr_rsolve.cpp \
-+    spqr_stranspose1.cpp \
-+    spqr_stranspose2.cpp \
-+    spqr_hpinv.cpp \
-+    spqr_1fixed.cpp \
-+    spqr_1colamd.cpp \
-+    SuiteSparseQR.cpp \
-+    spqr_1factor.cpp \
-+    spqr_cumsum.cpp \
-+    spqr_shift.cpp \
-+    spqr_happly.cpp \
-+    spqr_panel.cpp \
-+    spqr_happly_work.cpp \
-+    SuiteSparseQR_qmult.cpp \
-+    spqr_trapezoidal.cpp \
-+    spqr_larftb.cpp \
-+    spqr_append.cpp \
-+    spqr_type.cpp \
-+    spqr_tol.cpp
-+
-+libspqr_la_CPPFLAGS = $(AM_CPPFLAGS) $(METIS_CFLAGS) $(TBB_CFLAGS) $(LAPACK_CFLAGS)
-+libspqr_la_LIBADD = $(METIS_LIBS) $(TBB_LIBS) $(LAPACK_LIBS)
-diff -Naur SPQR.orig/configure.ac SPQR/configure.ac
---- SPQR.orig/configure.ac	1969-12-31 19:00:00.000000000 -0500
-+++ SPQR/configure.ac	2009-10-22 23:42:32.000000000 -0400
-@@ -0,0 +1,55 @@
-+AC_PREREQ(2.59)
-+AC_INIT(spqr, 1.1.0, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_CONFIG_SRCDIR([Source/spqr_kernel.cpp])
-+AM_INIT_AUTOMAKE([foreign])
-+
-+AC_PROG_LIBTOOL
-+AC_PROG_CXX
-+AC_LANG(C++)
-+
-+AC_CHECK_LIB(m, sqrt)
-+AC_CHECK_LIB(lapack,zlarft_)
-+AC_CHECK_HEADERS(UFconfig.h)
-+AC_CHECK_HEADERS(cholmod.h)
-+AC_CHECK_LIB(cholmod, cholmod_solve, [], \
-+            [AC_MSG_ERROR([Cannot find libcholmod])])
-+
-+AC_ARG_WITH(metis,
-+    [AC_HELP_STRING([--with-metis],
-+		    [Use METIS for partitioning])],
-+     [with_metis=$withval],
-+     [with_metis="yes"])
-+if test x$with_metis = xyes; then
-+    PKG_PROG_PKG_CONFIG
-+    if test -n "$PKG_CONFIG"; then
-+       PKG_CHECK_MODULES([metis], [metis])
-+    else
-+	AC_CHECK_HEADERS(metis.h)
-+    	AC_CHECK_LIB(metis, METIS_NodeND, [METIS_LIBS=-lmetis], \
-+		[AC_MSG_ERROR([Cannot find libmetis])])
-+    fi
-+    AC_DEFINE(NPARTITION)
-+fi
-+AM_CONDITIONAL([METIS], [test x$with_metis = xyes])
-+
-+AC_ARG_WITH(tbb,
-+    [AC_HELP_STRING([--with-tbb],
-+		    [Use Intel Threading Building Block for multithreading])],
-+     [with_tbb=$withval],
-+     [with_tbb="yes"])
-+if test x$with_tbb = xyes; then
-+    AC_CHECK_HEADERS(tbb/task.h)
-+    TBB_CFLAGS=""
-+    TBB_LIBS="-ltbb"
-+    AC_SUBST(TBB_CFLAGS)
-+    AC_SUBST(TBB_LIBS)
-+    AC_DEFINE(HAVE_TBB)
-+fi
-+AM_CONDITIONAL([WITH_TBB], [test x$with_tbb = xyes])
-+
-+AC_CONFIG_FILES([Makefile
-+    Source/Makefile
-+    Include/Makefile
-+    Demo/Makefile])
-+AC_OUTPUT
diff --git a/sci-libs/spqr/files/spqr-1.1.0-gcc43.patch b/sci-libs/spqr/files/spqr-1.1.0-gcc43.patch
deleted file mode 100644
index d9adb2093bb8..000000000000
--- a/sci-libs/spqr/files/spqr-1.1.0-gcc43.patch
+++ /dev/null
@@ -1,10 +0,0 @@
---- SPQR.orig/Source/spqr_factorize.cpp	2009-03-09 15:12:47.091289398 +0000
-+++ SPQR/Source/spqr_factorize.cpp	2009-03-14 09:30:18.570989288 +0000
-@@ -30,6 +30,7 @@
- // === macros ==================================================================
- // =============================================================================
- 
-+#include <cstring>
- #include "spqr.hpp"
- 
- #define FCHUNK 32        // FUTURE: make a parameter; Householder block size
diff --git a/sci-libs/spqr/files/1.2.2-autotools.patch b/sci-libs/spqr/files/spqr-1.2.3-autotools.patch
index d56ecdc54313..be5d15f188c3 100644
--- a/sci-libs/spqr/files/1.2.2-autotools.patch
+++ b/sci-libs/spqr/files/spqr-1.2.3-autotools.patch
@@ -21,64 +21,64 @@
 +
 +
 +check-local: $(check_PROGRAMS)
-+	./qrsimple < ../Matrix/ash219.mtx || exit 1
-+	./qrsimplec < ../Matrix/ash219.mtx || exit 1
-+	./qrsimple < ../Matrix/west0067.mtx || exit 1
-+	./qrsimplec < ../Matrix/west0067.mtx || exit 1
-+	./qrdemo < ../Matrix/a2.mtx || exit 1
-+	./qrdemo < ../Matrix/r2.mtx || exit 1
-+	./qrdemo < ../Matrix/a04.mtx || exit 1
-+	./qrdemo < ../Matrix/a2.mtx || exit 1
-+	./qrdemo < ../Matrix/west0067.mtx || exit 1
-+	./qrdemo < ../Matrix/c2.mtx || exit 1
-+	./qrdemo < ../Matrix/a0.mtx || exit 1
-+	./qrdemo < ../Matrix/lfat5b.mtx || exit 1
-+	./qrdemo < ../Matrix/bfwa62.mtx || exit 1
-+	./qrdemo < ../Matrix/LFAT5.mtx || exit 1
-+	./qrdemo < ../Matrix/b1_ss.mtx || exit 1
-+	./qrdemo < ../Matrix/bcspwr01.mtx || exit 1
-+	./qrdemo < ../Matrix/lpi_galenet.mtx || exit 1
-+	./qrdemo < ../Matrix/lpi_itest6.mtx || exit 1
-+	./qrdemo < ../Matrix/ash219.mtx || exit 1
-+	./qrdemo < ../Matrix/a4.mtx || exit 1
-+	./qrdemo < ../Matrix/s32.mtx || exit 1
-+	./qrdemo < ../Matrix/c32.mtx || exit 1
-+	./qrdemo < ../Matrix/lp_share1b.mtx || exit 1
-+	./qrdemo < ../Matrix/a1.mtx || exit 1
-+	./qrdemo < ../Matrix/GD06_theory.mtx || exit 1
-+	./qrdemo < ../Matrix/GD01_b.mtx || exit 1
-+	./qrdemo < ../Matrix/Tina_AskCal_perm.mtx || exit 1
-+	./qrdemo < ../Matrix/Tina_AskCal.mtx || exit 1
-+	./qrdemo < ../Matrix/GD98_a.mtx || exit 1
-+	./qrdemo < ../Matrix/Ragusa16.mtx || exit 1
-+	./qrdemo < ../Matrix/young1c.mtx || exit 1
-+	./qrdemoc < ../Matrix/a2.mtx || exit 1
-+	./qrdemoc < ../Matrix/r2.mtx || exit 1
-+	./qrdemoc < ../Matrix/a04.mtx || exit 1
-+	./qrdemoc < ../Matrix/a2.mtx || exit 1
-+	./qrdemoc < ../Matrix/west0067.mtx || exit 1
-+	./qrdemoc < ../Matrix/c2.mtx || exit 1
-+	./qrdemoc < ../Matrix/a0.mtx || exit 1
-+	./qrdemoc < ../Matrix/lfat5b.mtx || exit 1
-+	./qrdemoc < ../Matrix/bfwa62.mtx || exit 1
-+	./qrdemoc < ../Matrix/LFAT5.mtx || exit 1
-+	./qrdemoc < ../Matrix/b1_ss.mtx || exit 1
-+	./qrdemoc < ../Matrix/bcspwr01.mtx || exit 1
-+	./qrdemoc < ../Matrix/lpi_galenet.mtx || exit 1
-+	./qrdemoc < ../Matrix/lpi_itest6.mtx || exit 1
-+	./qrdemoc < ../Matrix/ash219.mtx || exit 1
-+	./qrdemoc < ../Matrix/a4.mtx || exit 1
-+	./qrdemoc < ../Matrix/s32.mtx || exit 1
-+	./qrdemoc < ../Matrix/c32.mtx || exit 1
-+	./qrdemoc < ../Matrix/lp_share1b.mtx || exit 1
-+	./qrdemoc < ../Matrix/a1.mtx || exit 1
-+	./qrdemoc < ../Matrix/GD06_theory.mtx || exit 1
-+	./qrdemoc < ../Matrix/GD01_b.mtx || exit 1
-+	./qrdemoc < ../Matrix/Tina_AskCal_perm.mtx || exit 1
-+	./qrdemoc < ../Matrix/Tina_AskCal.mtx || exit 1
-+	./qrdemoc < ../Matrix/GD98_a.mtx || exit 1
-+	./qrdemoc < ../Matrix/Ragusa16.mtx || exit 1
-+	./qrdemoc < ../Matrix/young1c.mtx || exit 1
++	./qrsimple < $(top_srcdir)/Matrix/ash219.mtx || exit 1
++	./qrsimplec < $(top_srcdir)/Matrix/ash219.mtx || exit 1
++	./qrsimple < $(top_srcdir)/Matrix/west0067.mtx || exit 1
++	./qrsimplec < $(top_srcdir)/Matrix/west0067.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/a2.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/r2.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/a04.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/a2.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/west0067.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/c2.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/a0.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/lfat5b.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/bfwa62.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/LFAT5.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/b1_ss.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/bcspwr01.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/lpi_galenet.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/lpi_itest6.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/ash219.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/a4.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/s32.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/c32.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/lp_share1b.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/a1.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/GD06_theory.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/GD01_b.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/GD98_a.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/Ragusa16.mtx || exit 1
++	./qrdemo < $(top_srcdir)/Matrix/young1c.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/a2.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/r2.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/a04.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/a2.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/west0067.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/c2.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/a0.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/lfat5b.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/bfwa62.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/LFAT5.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/b1_ss.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/bcspwr01.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/lpi_galenet.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/lpi_itest6.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/ash219.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/a4.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/s32.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/c32.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/lp_share1b.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/a1.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/GD06_theory.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/GD01_b.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/GD98_a.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/Ragusa16.mtx || exit 1
++	./qrdemoc < $(top_srcdir)/Matrix/young1c.mtx || exit 1
 --- Include/Makefile.am	1969-12-31 19:00:00.000000000 -0500
 +++ Include/Makefile.am	2009-10-22 23:42:08.000000000 -0400
 @@ -0,0 +1,5 @@
@@ -147,7 +147,7 @@
 +++ configure.ac	2009-10-22 23:42:32.000000000 -0400
 @@ -0,0 +1,55 @@
 +AC_PREREQ(2.59)
-+AC_INIT(spqr, 1.2.2, davis@cise.ufl.edu)
++AC_INIT(spqr, 1.2, davis@cise.ufl.edu)
 +AM_INIT_AUTOMAKE([foreign])
 +AC_CONFIG_SRCDIR([Source/spqr_kernel.cpp])
 +AM_INIT_AUTOMAKE([foreign])
diff --git a/sci-libs/spqr/spqr-1.2.1.ebuild b/sci-libs/spqr/spqr-1.2.1.ebuild
deleted file mode 100644
index 8d1cb1556084..000000000000
--- a/sci-libs/spqr/spqr-1.2.1.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/spqr/spqr-1.2.1.ebuild,v 1.1 2011/02/23 20:16:51 bicatali Exp $
-
-EAPI=2
-inherit eutils autotools
-
-MY_PN=SPQR
-DESCRIPTION="Multithreaded multifrontal sparse QR factorization library"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/SPQR"
-SRC_URI="http://www.cise.ufl.edu/research/sparse/${MY_PN}/${MY_PN}-${PV}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="doc metis static-libs tbb"
-RDEPEND="sci-libs/cholmod[supernodal]
-	tbb? ( dev-cpp/tbb )
-	metis? ( >=sci-libs/cholmod-1.7.0-r1[metis] )"
-DEPEND="${RDEPEND}
-	dev-util/pkgconfig"
-
-S="${WORKDIR}/${MY_PN}"
-
-src_prepare() {
-	cd "${WORKDIR}"
-	epatch "${FILESDIR}"/${PN}-1.1.0-autotools.patch
-	epatch "${FILESDIR}"/${PN}-1.1.0-gcc43.patch
-	cd "${S}"
-	eautoreconf
-}
-
-src_configure() {
-	econf \
-		$(use_enable static-libs static) \
-		$(use_with metis) \
-		$(use_with tbb)
-}
-
-src_install() {
-	emake DESTDIR="${D}" install || die "emake install failed"
-	dodoc README.txt Doc/ChangeLog || die "dodoc failed"
-	if use doc; then
-		insinto /usr/share/doc/${PF}
-		doins Doc/*.pdf || die
-	fi
-}
diff --git a/sci-libs/spqr/spqr-1.2.2.ebuild b/sci-libs/spqr/spqr-1.2.3.ebuild
index 9c14cf026b6d..8672398e08fd 100644
--- a/sci-libs/spqr/spqr-1.2.2.ebuild
+++ b/sci-libs/spqr/spqr-1.2.3.ebuild
@@ -1,9 +1,10 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2012 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/spqr/spqr-1.2.2.ebuild,v 1.1 2011/08/07 03:47:10 bicatali Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/spqr/spqr-1.2.3.ebuild,v 1.1 2012/01/20 05:53:50 bicatali Exp $
 
 EAPI=4
-inherit eutils autotools
+AUTOTOOLS_AUTORECONF=yes
+inherit autotools-utils
 
 MY_PN=SPQR
 DESCRIPTION="Multithreaded multifrontal sparse QR factorization library"
@@ -20,22 +21,20 @@ RDEPEND="sci-libs/cholmod[supernodal]
 DEPEND="${RDEPEND}
 	dev-util/pkgconfig"
 
-S="${WORKDIR}/${MY_PN}"
+DOCS=( README.txt Doc/ChangeLog )
+PATCHES=( "${FILESDIR}"/${P}-autotools.patch )
 
-src_prepare() {
-	epatch "${FILESDIR}"/${PV}-autotools.patch
-	eautoreconf
-}
+S="${WORKDIR}/${MY_PN}"
 
 src_configure() {
-	econf \
-		$(use_enable static-libs static) \
-		$(use_with metis) \
+	myeconfargs+=(
+		$(use_with metis)
 		$(use_with tbb)
+	)
+	autotools-utils_src_configure
 }
 
 src_install() {
-	default
-	dodoc README.txt Doc/ChangeLog
+	autotools-utils_src_install
 	use doc && doins Doc/*.pdf
 }
diff --git a/sci-libs/umfpack/ChangeLog b/sci-libs/umfpack/ChangeLog
index 43fe15ce695c..59bed4daf9bd 100644
--- a/sci-libs/umfpack/ChangeLog
+++ b/sci-libs/umfpack/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/umfpack
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/umfpack/ChangeLog,v 1.25 2011/08/04 17:36:44 bicatali Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/umfpack/ChangeLog,v 1.26 2012/01/20 05:54:40 bicatali Exp $
+
+*umfpack-5.5.2 (20 Jan 2012)
+
+  20 Jan 2012; Sébastien Fabbro <bicatali@gentoo.org> +umfpack-5.5.2.ebuild:
+  Version bump
 
   04 Aug 2011; Sébastien Fabbro <bicatali@gentoo.org>
   +files/5.5.1-autotools.patch, -umfpack-5.4.0.ebuild, -umfpack-5.5.0.ebuild,
diff --git a/sci-libs/umfpack/umfpack-5.5.2.ebuild b/sci-libs/umfpack/umfpack-5.5.2.ebuild
new file mode 100644
index 000000000000..83b79ffaea9f
--- /dev/null
+++ b/sci-libs/umfpack/umfpack-5.5.2.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2012 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/umfpack/umfpack-5.5.2.ebuild,v 1.1 2012/01/20 05:54:40 bicatali Exp $
+
+EAPI=4
+AUTOTOOLS_AUTORECONF=yes
+inherit autotools-utils fortran-2
+
+MY_PN=UMFPACK
+
+DESCRIPTION="Unsymmetric multifrontal sparse LU factorization library"
+HOMEPAGE="http://www.cise.ufl.edu/research/sparse/umfpack"
+SRC_URI="http://www.cise.ufl.edu/research/sparse/${PN}/${MY_PN}-${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~hppa ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~x86-macos"
+IUSE="doc metis static-libs"
+RDEPEND="virtual/fortran
+	virtual/blas
+	sci-libs/amd
+	metis? ( sci-libs/cholmod[metis] )"
+DEPEND="${RDEPEND}
+	dev-util/pkgconfig"
+
+PATCHES=( "${FILESDIR}"/5.5.1-autotools.patch )
+DOCS=( README.txt Doc/ChangeLog )
+
+S="${WORKDIR}/${MY_PN}"
+
+src_configure() {
+	myeconfargs+=(
+		--with-blas="$(pkg-config --libs blas)"
+		$(use_with metis cholmod)
+	)
+	autotools-utils_src_configure
+}
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dodoc Doc/*.pdf
+}
author	Sebastien Fabbro <bicatali@gentoo.org>	2012-01-20 05:54:40 +0000
committer	Sebastien Fabbro <bicatali@gentoo.org>	2012-01-20 05:54:40 +0000
commit	b3ab498cb2be2d8c528647e3a344d4187b8afef3 (patch)
tree	c51cb8dd62b3764d5a081c84b73f4c37326f825e /sci-libs
parent	Depend on >=requests-0.9.1 (diff)
download	historical-b3ab498cb2be2d8c528647e3a344d4187b8afef3.tar.gz historical-b3ab498cb2be2d8c528647e3a344d4187b8afef3.tar.bz2 historical-b3ab498cb2be2d8c528647e3a344d4187b8afef3.zip