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-rw-r--r--sci-chemistry/babel/Manifest14
-rw-r--r--sci-chemistry/eden/ChangeLog7
-rw-r--r--sci-chemistry/eden/Manifest14
-rw-r--r--sci-chemistry/eden/eden-5.3-r1.ebuild16
4 files changed, 28 insertions, 23 deletions
diff --git a/sci-chemistry/babel/Manifest b/sci-chemistry/babel/Manifest
index 849d2b1b38a7..7cf37fcf3abd 100644
--- a/sci-chemistry/babel/Manifest
+++ b/sci-chemistry/babel/Manifest
@@ -1,19 +1,19 @@
-----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
AUX 10babel 27 RMD160 b63901d7aae926d444049c6fa6bac6a09faa6642 SHA1 35bdc79adecc8c2f050a104bec276e1504ef180e SHA256 9635640dab2a697d6a2fa5ea57d43181983de444c021d28e510deecd17a5034a
AUX babel-1.6-gcc32.diff 549 RMD160 23a188f6a1f9d26b33644e8732c504ee6e9478d1 SHA1 a93852d0a4cb784fe84eda449619fa208d9f7665 SHA256 d6440085242797decf8fa791b74d7c2227c9e01789458a684b054bbfd6d8ce7f
AUX babel-1.6-gentoo.diff 569 RMD160 031ee771d49346976531d8e2f799842e58589fbd SHA1 80e7be957fdf81debab0204f0d6859a85a1acf10 SHA256 ea7e08b550186358ac4ecfb935d24be339dd52f35119789160fb6aa3bc72a8d0
AUX babel-1.6-makefile.patch 716 RMD160 59e300ca8ccd6314bc4b913bdb725e97abbc9bd7 SHA1 50e7601e8cbaafa73fedb37b0a76b71b02cf3f9e SHA256 3328dee8ca60a98667c3789899e741cca95aeefd7a67c1211840482ea38ad244
DIST babel-1.6.tar.Z 242341 RMD160 4a6dbd960ed9eef2088e8b32e627ed563fb6ddab SHA1 a5439d19c696373772f0785474cc7b53226163f9 SHA256 132a800cfe0c15b47391c809481a7ca174bbd1402aac7486e0973da0fd4db948
-EBUILD babel-1.6-r1.ebuild 799 RMD160 c490d32d40a9502bbde4e0528f9de999e4a3116c SHA1 9c2f491257a994022aff9dc1b2691342740d11b4 SHA256 c7273d6a9a33cf711477920fe4e25d75db3ecbc9182d786814763559b0faba10
+EBUILD babel-1.6-r1.ebuild 799 RMD160 20e2e4beccd79629ee46586eead34d107b1ed30a SHA1 1c14742e3d484372cb98adf530ed1ca8fda97cf7 SHA256 cc51e1b3bc6ee2662994b2635c8098749cac8a65e2f2fde67a975519a2547832
EBUILD babel-1.6.ebuild 909 RMD160 be1709782d0565a0c500e243c3d0e2220ba7d45c SHA1 7de7a2d282700c2650d5852968955791b958084b SHA256 d6fe000adaa646dd15f5cd34d2b8be2f9038ec949c6dd14f351c2bd684d04e3b
-MISC ChangeLog 2520 RMD160 796686696e4102f9a72a1cfc7c16f70fa1c1b5bc SHA1 bae04c782b01ee77f4db4796d991f247991f970d SHA256 bdd0297be20b351f5c3c54fa90b114a1fa3cc401617e208b9218b4fbc0516fc2
+MISC ChangeLog 2624 RMD160 14cb241872f2ad371a4964aca79903e974210a53 SHA1 5c6c5ce5d3cfd4a598f0cd0c5c1f835e0813e1cd SHA256 a76f066e8dbd973bdde1c030f56b24693354c7eb6745c17b0e3f9571bc9723b2
MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8
-----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
-iEYEAREIAAYFAk4GJBIACgkQgAnW8HDreRbS/ACghybuogrAv/D1vv0uRjF9tRy5
-sxsAn14lNeJFft4gwaV13I6n2n/Qrl1+
-=rIV1
+iEYEAREKAAYFAk7rQckACgkQgAnW8HDreRZvvACeP+4/pmi1hN0Xs6D1uDclUWRp
+xMgAnjCSZYJoxSnIh1XKSSWf0ZEbkhrc
+=OgGM
-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/eden/ChangeLog b/sci-chemistry/eden/ChangeLog
index cc43cc92355e..7c7e7245a986 100644
--- a/sci-chemistry/eden/ChangeLog
+++ b/sci-chemistry/eden/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-chemistry/eden
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/eden/ChangeLog,v 1.13 2010/09/18 15:53:18 jlec Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/eden/ChangeLog,v 1.14 2011/12/16 12:59:33 jlec Exp $
+
+ 16 Dec 2011; Justin Lecher <jlec@gentoo.org> eden-5.3-r1.ebuild:
+ Add missing die, use pkg-config for gsl detection.
*eden-5.3-r1 (18 Sep 2010)
diff --git a/sci-chemistry/eden/Manifest b/sci-chemistry/eden/Manifest
index fd1e3d071649..697e182a1730 100644
--- a/sci-chemistry/eden/Manifest
+++ b/sci-chemistry/eden/Manifest
@@ -1,17 +1,17 @@
-----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA512
AUX 5.3-makefile-fixes.patch 1543 RMD160 80f21634650d3bc75744977d8059178e40fb8058 SHA1 97a3fe303a0376ca371030e8db272f4f0783620e SHA256 92a86bd9b942d12138a89ab863daf0d95ad413a82c88a09d21e3ee04c5b5e55d
AUX makefile-fixes.patch 837 RMD160 c63c95b89f5d2fce1610a0abf6c6c25121d5e3b6 SHA1 b4fee6c94d2f6e3827dc47dea3f493944948bf3d SHA256 6f7612404cccd9e40de19df3f86eb86be9a17fa105eac21e615c0d464f92cc31
DIST eden_V5.3.tar.gz 1139981 RMD160 2cf8eca5e0ba90f558eeab9c72cd98c8cbb8f3ac SHA1 ceefd810044dfa33063fe35d3de80d0c454dd3be SHA256 249447f507ace3e188ce0d76796c6e307c043592405db1f6c24f3e90917ec524
-EBUILD eden-5.3-r1.ebuild 1915 RMD160 86133104b0a54c3249928f532fbb13adbfdd3b28 SHA1 d5abaf6606e1a3d47e452bc57763cd0bea832b6b SHA256 ac42502937f971f104f34980f90f84975a1bba267466bf2f8332b1d0937afa5c
+EBUILD eden-5.3-r1.ebuild 1998 RMD160 247ed1fd4b148dd6eac364e09f9ca555a377e22e SHA1 0ca20d69ac86ecc74e25008a75825e67e084cd3d SHA256 1d906e36ef01ca1be44112fc11d1e1eb48ebdda345056327f5202b64f01dfe0a
EBUILD eden-5.3.ebuild 1641 RMD160 c57295292c87236bc5bba32e5e4ffbb8ab404b3e SHA1 d48339376944143c3b1bc74a89801b9b5e15607b SHA256 909805cfebadf7de5fd3624f8fb2a41446e3e77f264094cebc90b3527ca9a8d4
-MISC ChangeLog 2008 RMD160 3df004fb0cce8759a09875a1a23fd40f574019f5 SHA1 13dc0a73ad6499aff7eeafb2de663af261b6d7c0 SHA256 ad30595e955e700e28c64cae60455cb186c49f2ac32e38fc95316ba73411d33d
+MISC ChangeLog 2129 RMD160 9cf0e195b80b12b590e60f283870db59a31e5f82 SHA1 fbfbd99b956cbfff7c0da6ab453c6c19ce19e384 SHA256 13e5ee126e1476ed61e536250a4cd88273fc2c49e7efe2c05e9f086ffdc61189
MISC metadata.xml 272 RMD160 fe1b9485c16c778c9af6759a25de99a0f290812d SHA1 b95bdac297f6704d6c9bfcfdbb17b27280567792 SHA256 32b8b0a739fa026bbfebf578484ee84f6e14b137aa54308256427d779f0f9501
-----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.16 (GNU/Linux)
+Version: GnuPG v2.0.18 (GNU/Linux)
-iEYEARECAAYFAkyU4HQACgkQgAnW8HDreRahDACcCo3zqRG6+PquFXozQgMNt5dB
-rW4AoM39AQrB/t6hMHc+5efBvSBbEplA
-=vQOV
+iEYEAREKAAYFAk7rQL4ACgkQgAnW8HDreRbfawCgtw2uQtDdMvWqMlPM2DXLI5Qy
+x+YAn27bP1mnFozi2iWBImhrscpz5091
+=Lsrs
-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/eden/eden-5.3-r1.ebuild b/sci-chemistry/eden/eden-5.3-r1.ebuild
index 46af00db9dd2..d63a2f1d2a19 100644
--- a/sci-chemistry/eden/eden-5.3-r1.ebuild
+++ b/sci-chemistry/eden/eden-5.3-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2010 Gentoo Foundation
+# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/eden/eden-5.3-r1.ebuild,v 1.1 2010/09/18 15:53:18 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/eden/eden-5.3-r1.ebuild,v 1.2 2011/12/16 12:59:33 jlec Exp $
EAPI="3"
@@ -9,8 +9,9 @@ PYTHON_DEPEND="2"
inherit eutils multilib python toolchain-funcs
MY_P="${PN}_V${PV}"
+
DESCRIPTION="A crystallographic real-space electron-density refinement and optimization program"
-HOMEPAGE="http://www.gromacs.org/pipermail/eden-users"
+HOMEPAGE="http://www.gromacs.org/pipermail/eden-users/"
SRC_URI="mirror://gentoo/${MY_P}.tar.gz"
LICENSE="GPL-2"
@@ -21,7 +22,8 @@ IUSE="double-precision"
RDEPEND="
sci-libs/fftw:2.1
sci-libs/gsl"
-DEPEND="${RDEPEND}"
+DEPEND="${RDEPEND}
+ dev-util/pkgconfig"
S="${WORKDIR}/${PN}"
@@ -40,10 +42,11 @@ src_prepare() {
-e "s:^\(LIB.*=.*\$(FFTW)/\).*:\1$(get_libdir):g" \
-e "s:^\(BIN.*=\).*:\1 ${D}usr/bin:g" \
-e "s:^\(CFLAGS.*=\).*:\1 ${CFLAGS}:g" \
+ -e "s:-lgsl -lgslcblas:$(pkg-config --libs gsl):g" \
${SRC}/Makefile || die
if ! use double-precision; then
- sed -i -e "s:^\(DOUBLESWITCH.*=\).*:\1 OFF:g" ${SRC}/Makefile
+ sed -i -e "s:^\(DOUBLESWITCH.*=\).*:\1 OFF:g" ${SRC}/Makefile || die
EXE="seden"
else
EXE="deden"
@@ -51,8 +54,7 @@ src_prepare() {
}
src_compile() {
- cd ${SRC}
- emake CC=$(tc-getCC) || die "emake failed"
+ emake CC=$(tc-getCC) -C ${SRC} || die "emake failed"
}
src_install() {