diff options
Diffstat (limited to 'sci-chemistry/autodock')
| -rw-r--r-- | sci-chemistry/autodock/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-chemistry/autodock/Manifest | 15 | ||||
| -rw-r--r-- | sci-chemistry/autodock/autodock-4.0.1-r1.ebuild | 70 | ||||
| -rw-r--r-- | sci-chemistry/autodock/autodock-4.0.1.ebuild | 47 | ||||
| -rw-r--r-- | sci-chemistry/autodock/autodock-4.2.3-r1.ebuild (renamed from sci-chemistry/autodock/autodock-4.2.3.ebuild) | 29 |
5 files changed, 35 insertions, 136 deletions
diff --git a/sci-chemistry/autodock/ChangeLog b/sci-chemistry/autodock/ChangeLog index ff9c6f9528e6..b91d07c668dc 100644 --- a/sci-chemistry/autodock/ChangeLog +++ b/sci-chemistry/autodock/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-chemistry/autodock # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.7 2010/02/04 13:03:15 alexxy Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.8 2010/06/25 10:41:06 jlec Exp $ + +*autodock-4.2.3-r1 (25 Jun 2010) + + 25 Jun 2010; Justin Lecher <jlec@gentoo.org> -autodock-4.0.1.ebuild, + -autodock-4.0.1-r1.ebuild, -autodock-4.2.3.ebuild, + +autodock-4.2.3-r1.ebuild: + Fixed installation issue when csh is not present, #303463; fix src_test, + #320345; removed old, fixed PYTHON ABIs stuff *autodock-4.2.3 (04 Feb 2010) diff --git a/sci-chemistry/autodock/Manifest b/sci-chemistry/autodock/Manifest index 85d639df4dfa..e63358b0f96b 100644 --- a/sci-chemistry/autodock/Manifest +++ b/sci-chemistry/autodock/Manifest @@ -2,17 +2,14 @@ Hash: SHA1 AUX 4.0.1-gcc-4.3.patch 288 RMD160 baa74a563ff1307f10f7a8231884004c62f42598 SHA1 7316ded087e79b04a9c5cd0437ef07d7bc10a83f SHA256 1bbd84b47a93856245103e2c6ab3ed4932ab0d8909010f2e43fd62bdf680936c -DIST autodocksuite-4.0.1-src.tar.gz 1898212 RMD160 af2709277c1e9d36602c7100091b707937aa32d8 SHA1 3c43d9cf67790b47803a37e9e8ace893018cf874 SHA256 8265e313c575dbb4e284dab90af2ed9b8f34dfdeb45508e652ca5fa9a09dc11b DIST autodocksuite-4.2.3-src.tar.gz 3680365 RMD160 8b0712d5a70611830d49af412cf3b33304562d91 SHA1 cd0d89624f729ea555480713f7b07464dc2d4908 SHA256 e401ed7e15b3dc0fbcda4e90931631e98e22eed2fe7f67b98cdc9c419bbf3a88 -EBUILD autodock-4.0.1-r1.ebuild 1779 RMD160 97bf7f90b4a2fe0b2591852a3ff8b493e191358f SHA1 db503745862b6ccdd56cb743254dcb8bb65958d4 SHA256 088749dcf8ace7b293e39269b7f7295f97a05b7cfaf07728c59561e1c198737a -EBUILD autodock-4.0.1.ebuild 1138 RMD160 a1ba78e2bd89663670b4d6f8582c22d04ea07b37 SHA1 60f811a48b2d497698d0c890ca6db093eff826dd SHA256 fc9045111ea03f1aaa0340b002384320a8cce2204b1723b4d423af5a6771326d -EBUILD autodock-4.2.3.ebuild 1729 RMD160 ef4c0d0229835dee862b344c48044ede5cd75747 SHA1 6148392983169b3d9562c5acd04ca06483760456 SHA256 9a07d0b5719bd86293a7b90adf8a809a038cde61d0abb2dd17001aa0caee8c1e -MISC ChangeLog 1225 RMD160 1ea5654061241393ffa05d4ee3652877f99dc1da SHA1 570c9935b940ee026a2e24f85990028e995a1215 SHA256 777afca9ff3a63f0dfe700ca8bb56182b7c2ad3c84c3b204eee52b3c8a3c873d +EBUILD autodock-4.2.3-r1.ebuild 1990 RMD160 06dd1a2ce4958a5d383c1591c1691d85747ba008 SHA1 3426cde34a67f6d0ff1e34aca043e1e167364819 SHA256 0411a5ebb552cc397c98f9250106be798a0213674503ae6027aff85a474648d3 +MISC ChangeLog 1534 RMD160 3a4d3272cf7f5ae8f9be04723c3b94f97f61e0ad SHA1 51dbd9d926d927106e1b1c86da742beab8133af4 SHA256 adeab4948ed6d8b67afe5391c9e1d0dc6d931f8d631a43573777547d5f0ef6dc MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.14 (GNU/Linux) +Version: GnuPG v2.0.15 (GNU/Linux) -iEYEARECAAYFAktqxZ8ACgkQ5BmOA85PVLiC7QCfTiBC5XQbVTU+a3JtbiuRFlVj -KuAAnRwVSU2fiJcj4HN9MXz3aWHohuQ4 -=bnth +iEYEARECAAYFAkwkh8gACgkQgAnW8HDreRY19ACfYkCEjo9Vbvoz2T+/GoPUVo4Q +iUkAnj2SkEC21fJPvejGy8OwV5nE2yhj +=GyOx -----END PGP SIGNATURE----- diff --git a/sci-chemistry/autodock/autodock-4.0.1-r1.ebuild b/sci-chemistry/autodock/autodock-4.0.1-r1.ebuild deleted file mode 100644 index 5d84dfb185c9..000000000000 --- a/sci-chemistry/autodock/autodock-4.0.1-r1.ebuild +++ /dev/null @@ -1,70 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.0.1-r1.ebuild,v 1.2 2008/08/05 05:48:56 dberkholz Exp $ - -inherit eutils - -MY_PN="autodocksuite" -MY_P="${MY_PN}-${PV}" - -DESCRIPTION="A suite of automated docking tools" -HOMEPAGE="http://autodock.scripps.edu/" -SRC_URI="mirror://gentoo/${MY_PN}/${MY_P}-src.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -S="${WORKDIR}/${MY_P}/src" - -src_unpack() { - unpack ${A} - cd "${S}" - epatch "${FILESDIR}"/${PV}-gcc-4.3.patch -} - -src_compile() { - cd autodock/ - econf || die "AutoDock econf failed." - emake || die "AutoDock emake failed." - cd .. - - cd autogrid/ - econf || die "AutoGrid econf failed." - emake || die "AutoGrid emake failed." - cd .. -} - -src_install() { - cd "${S}/autodock" - dobin autodock4 || die "Failed to install autodock binary." - dodoc AUTHORS ChangeLog NEWS README || die \ - "Failed to install documentation." - insinto "/usr/share/autodock" - doins AD4_parameters.dat AD4_PARM99.dat || die \ - "Failed to install shared files." - - cd "${S}/autogrid" - dobin autogrid4 || die "Failed to install autogrid binary." -} - -src_test() { - cd "${S}/autodock/Tests" - python test_autodock4.py || die "AutoDock tests failed." - cd "${S}/autogrid/Tests" - python test_autogrid4.py || die "AutoGrid tests failed." -} - -pkg_postinst() { - echo - einfo "The AutoDock development team requests all users to fill out the" - einfo "registration form at:" - einfo - einfo "\thttp://autodock.scripps.edu/downloads/autodock-registration" - einfo - einfo "The number of unique users of AutoDock is used by Prof. Arthur J." - einfo "Olson and the Scripps Research Institude to support grant" - einfo "applications." - echo -} diff --git a/sci-chemistry/autodock/autodock-4.0.1.ebuild b/sci-chemistry/autodock/autodock-4.0.1.ebuild deleted file mode 100644 index 7805ff6ec7b8..000000000000 --- a/sci-chemistry/autodock/autodock-4.0.1.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2007 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.0.1.ebuild,v 1.2 2007/06/21 14:58:03 ribosome Exp $ - -MY_PN="autodocksuite" -MY_P="${MY_PN}-${PV}" - -DESCRIPTION="A suite of automated docking tools" -HOMEPAGE="http://autodock.scripps.edu/" -SRC_URI="mirror://gentoo/${MY_PN}/${MY_P}-src.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -S="${WORKDIR}/${MY_P}/src" - -src_compile() { - cd autodock/ - econf || die "econf failed" - emake || die "build failed" - cd .. - - cd autogrid/ - econf || die "econf failed" - emake || die "build failed" - cd .. -} - -src_install() { - dobin autodock/autodock4 - dobin autogrid/autogrid4 -} - -pkg_postinst() { - echo - einfo "The AutoDock development team requests all users to fill out the" - einfo "registration form at:" - einfo - einfo "\thttp://autodock.scripps.edu/downloads/autodock-registration" - einfo - einfo "The number of unique users of AutoDock is used by Prof. Arthur J." - einfo "Olson and the Scripps Research Institude to support grant" - einfo "applications." - echo -} diff --git a/sci-chemistry/autodock/autodock-4.2.3.ebuild b/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild index 465d14e7a73c..dfe28fb48fc0 100644 --- a/sci-chemistry/autodock/autodock-4.2.3.ebuild +++ b/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild @@ -1,10 +1,12 @@ # Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3.ebuild,v 1.1 2010/02/04 13:03:15 alexxy Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.2.3-r1.ebuild,v 1.1 2010/06/25 10:41:06 jlec Exp $ EAPI="2" -inherit autotools eutils +PYTHON_DEPEND="test? 2" + +inherit autotools eutils python MY_PN="autodocksuite" MY_P="${MY_PN}-${PV}" @@ -20,19 +22,25 @@ IUSE="" S="${WORKDIR}/src" +pkg_setup() { + python_set_active_version 2 +} + src_prepare() { + sed -i -e "s/\tcsh/\tsh/" \ + autodock/Makefile.am autogrid/Makefile.am || die "sed failed" for i in autodock autogrid; do - pushd $i + pushd $i &>/dev/null eautoreconf - popd + popd &>/dev/null done } src_configure() { for i in autodock autogrid; do - pushd $i - econf || die "AutoDock econf failed." - popd + pushd $i &>/dev/null + econf + popd &>/dev/null done } @@ -54,10 +62,13 @@ src_install() { } src_test() { + einfo "Testing autodock" cd "${S}/autodock/Tests" - python test_autodock4.py || die "AutoDock tests failed." + cp ../*.dat . + $(PYTHON) test_autodock4.py || die "AutoDock tests failed." + einfo "Testing autogrid" cd "${S}/autogrid/Tests" - python test_autogrid4.py || die "AutoGrid tests failed." + $(PYTHON) test_autogrid4.py || die "AutoGrid tests failed." } pkg_postinst() { |