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* sci-biology/vaal: Version BUmpJustin Lecher2013-02-204-24/+73
* sci-biology/allpathslg: Drop oldJustin Lecher2013-02-203-54/+9
* Stable for amd64, wrt bug #458106Agostino Sarubbo2013-02-203-11/+23
* sci-biology/ncbi-tools: Drop old; rename fmerge.1 to fmerg-ncbi.1 -> resolves...Justin Lecher2013-02-188-438/+35
* sci-biology/allpathslg: Drop oldJustin Lecher2013-02-184-59/+16
* sci-biology/raxml: Drop old; stop building when non sse3 capable CPU is detec...Justin Lecher2013-02-187-155/+32
* sci-biology/beast-mcmc: Version Bump, fixes missing package, #374277Justin Lecher2013-02-184-12/+116
* sci-biology/unafold: Fix test, #358053; respect CFLAGSJustin Lecher2013-02-185-14/+64
* sci-biology/rmblast: Bug fixes: Build against any boost, #356315; build with ...Justin Lecher2013-02-186-27/+940
* sci-biology/phyml: Drop OldJustin Lecher2013-02-184-51/+13
* sci-biology/sibsim4: Drop OldJustin Lecher2013-02-183-45/+9
* Stable for x86, wrt bug #328425Agostino Sarubbo2013-02-173-18/+21
* Stable for amd64, wrt bug #328431Agostino Sarubbo2013-02-173-9/+21
* Stable for amd64, wrt bug #328425Agostino Sarubbo2013-02-173-7/+30
* sci-biology/phylip: Respect LDFLAGS, #337921Justin Lecher2013-02-175-68/+78
* sci-biology/shrimp: Force sse2 support by the cpu, #337401Justin Lecher2013-02-173-8/+15
* sci-biology/sibsim4: Respect CC, CFLAGS and LDFLAGS, #328431Justin Lecher2013-02-174-22/+34
* sci-biology/bfast: Build in source for testsJustin Lecher2013-02-173-8/+13
* sci-biology/phrap: Add missing deps, thanks Martin Mokrejš for the patchJustin Lecher2013-02-174-14/+33
* sci-biology/consed: Quote EPREFIX, thanks Martin Mokrejš for the patchJustin Lecher2013-02-174-28/+22
* sci-biology/bfast: Drop old; move to autotools-utils; install docs in right p...Justin Lecher2013-02-176-90/+32
* sci-biology/mcl: Version BUmp; move to autotools-utils; install docs in right...Justin Lecher2013-02-175-20/+80
* sci-biology/shrimp: Drop old; block collision with emboss, #450426; move to n...Justin Lecher2013-02-176-96/+46
* sci-biology/primer3: Version BumpJustin Lecher2013-02-143-7/+60
* sci-biology/vienna-rna: Version Bump; move to EAPI=5, new python eclasses; au...Justin Lecher2013-02-137-6/+214
* Specify LICENSE more precisely, see LICENSE file, bug 455566.Ulrich Müller2013-02-055-11/+35
* Add ~ppc, wrt bug #452010Agostino Sarubbo2013-02-033-16/+8
* sci-biology/readseq: Drop old; Resolve file collision sci-biology/meme, #455010Justin Lecher2013-02-016-84/+29
* sci-biology/meme: Resolve file collision with app-text and sci-biology/readse...Justin Lecher2013-02-014-10/+102
* sci-biology/augustus: Drop old, fixes multiple QA issues, #454822Justin Lecher2013-01-316-127/+22
* Stable for x86, wrt bug #454842Agostino Sarubbo2013-01-313-5/+8
* Stable for amd64, wrt bug #454842Agostino Sarubbo2013-01-313-27/+19
* sci-biology/vienna-rna: Only call distutils phase functions with USE=python, ...Justin Lecher2013-01-314-14/+25
* sci-biology/meme: Drop old, fixes bug 297070 & bug 454662Justin Lecher2013-01-314-72/+19
* Stable for x86, wrt bug #454698Agostino Sarubbo2013-01-303-5/+8
* Stable for amd64, wrt bug #454698Agostino Sarubbo2013-01-303-16/+8
* sci-biology/meme: Drop old; add examples handlingJustin Lecher2013-01-306-149/+20
* sci-biology/bamtools: Version Bump; #452234; unbundles dev-libs/jsoncppJustin Lecher2013-01-285-20/+102
* sci-biology/samtools: Add missing deps and correct sed lines, #454134; thanks...Justin Lecher2013-01-273-10/+20
* sci-biology/exonerate: We need USE=utils for testing, #453978; move to autoto...Justin Lecher2013-01-254-35/+46
* sci-biology/maqview: Fix compilation with gcc-4.7, #451438Justin Lecher2013-01-235-19/+75
* sci-biology/samtools: Drop old; use pkg-config to check for libncursesJustin Lecher2013-01-236-122/+35
* Adding blocker for #453044Patrick Lauer2013-01-235-24/+28
* Version bumpAndrey Kislyuk2013-01-213-21/+53
* sci-biology/t-coffee: Don't build TMalign, but depend on sci-chemistry/tm-ali...Justin Lecher2013-01-144-20/+29
* Forward command line arguments to ApE startup script, thanks to Markus Meier ...Jeffrey Gardner2012-12-313-5/+68
* sci-biology/primer3: Drop oldJustin Lecher2012-12-174-101/+16
* Stable for ppc, wrt bug #446992Agostino Sarubbo2012-12-163-5/+8
* Stable for x86, wrt bug #446992Agostino Sarubbo2012-12-163-5/+8
* Update LICENSE, HPND according to LICENSE file.Ulrich Müller2012-12-145-23/+37