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authorDavid Seifert <soap@gentoo.org>2023-07-30 00:16:16 +0200
committerDavid Seifert <soap@gentoo.org>2023-07-30 00:16:16 +0200
commita5230ca9d6b5203c8a3177f25f39bdf2a555745c (patch)
treea2fbe429c1a307a83b344dd11a25f80c1138ec9f /sci-biology/biopython
parentwww-client/opera-developer: remove old (diff)
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sci-biology/biopython: drop 1.81
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/biopython')
-rw-r--r--sci-biology/biopython/biopython-1.81.ebuild61
1 files changed, 0 insertions, 61 deletions
diff --git a/sci-biology/biopython/biopython-1.81.ebuild b/sci-biology/biopython/biopython-1.81.ebuild
deleted file mode 100644
index 8b90d610c6ae..000000000000
--- a/sci-biology/biopython/biopython-1.81.ebuild
+++ /dev/null
@@ -1,61 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{9..11} )
-
-inherit distutils-r1 optfeature pypi
-
-DESCRIPTION="Python modules for computational molecular biology"
-HOMEPAGE="https://www.biopython.org/ https://pypi.org/project/biopython/"
-
-LICENSE="HPND"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-RDEPEND="
- dev-python/matplotlib[${PYTHON_USEDEP}]
- dev-python/networkx[${PYTHON_USEDEP}]
- dev-python/numpy[${PYTHON_USEDEP}]
- dev-python/rdflib[${PYTHON_USEDEP}]
- dev-python/pygraphviz[${PYTHON_USEDEP}]
- >=dev-python/reportlab-3.5.13-r1[${PYTHON_USEDEP}]
- dev-python/pydot[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}"
-BDEPEND="sys-devel/flex"
-
-DOCS=( {CONTRIB,DEPRECATED,NEWS,README}.rst Doc/. )
-
-python_test() {
- distutils_install_for_testing
- cp -r {Doc,Tests} "${TEST_DIR}"/lib/ || die
-
- # need to create symlinks for doctests
- mkdir -p "${TEST_DIR}"/lib/Bio/Align || die
- ln -r -s "${S}"/Bio/Align/substitution_matrices \
- "${TEST_DIR}"/lib/Bio/Align/substitution_matrices || die
-
- cd "${TEST_DIR}"/lib/Tests || die
- rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die
- "${EPYTHON}" run_tests.py --offline --verbose || die
-}
-
-python_install_all() {
- # remove files causing ecompressdir to fail
- rm Doc/examples/ls_orchid.gbk.{gz,bz2} || die
-
- distutils-r1_python_install_all
-
- dodir /usr/share/${PN}
- cp -r --preserve=mode Scripts Tests "${ED}"/usr/share/${PN} || die
-}
-
-pkg_postinst() {
- optfeature_header "For database support you need to install:"
- optfeature "MySQL database support" dev-python/mysqlclient
- optfeature "PostgreSQL database support" dev-python/psycopg:2
-
- optfeature_header "Some applications need extra packages:"
- optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss
-}