Update Guide to 8137ef6

Signed-off-by: Michał Górny <mgorny@gentoo.org>

8 files changed, 421 insertions, 1 deletions

diff --git a/guide/_sources/index.rst.txt b/guide/_sources/index.rst.txt
index 7b395b5..ed09999 100644
--- a/guide/_sources/index.rst.txt
+++ b/guide/_sources/index.rst.txt
@@ -26,6 +26,7 @@ Gentoo Python Guide
    buildsys
    porting
    migration
+   qawarn
    package-maintenance
    interpreter-maintenance
 
diff --git a/guide/_sources/qawarn.rst.txt b/guide/_sources/qawarn.rst.txt
new file mode 100644
index 0000000..88a49f3
--- /dev/null
+++ b/guide/_sources/qawarn.rst.txt
@@ -0,0 +1,150 @@
+======================
+QA checks and warnings
+======================
+
+.. highlight:: text
+
+This section explains Python-related QA checks and the resulting QA
+warnings that can be output while running the package manager or related
+tooling.
+
+
+Improved QA warning reporting in Portage
+========================================
+Normally, Portage outputs QA warnings at specific phases of the build
+process.  They are usually interspersed with other verbose output,
+and they are easy to miss, especially when building multiple packages
+in a single batch.
+
+To make them easier to catch, Portage's elog system can be used
+to repeat all the QA warnings once emerge exits.  The required "echo"
+module is already enabled by default, however it skips QA warnings
+by default.  To change that, set in your ``make.conf``:
+
+.. code-block:: bash
+
+    PORTAGE_ELOG_CLASSES="log warn error qa"
+
+For more information on using Portage's elog system, please refer
+to make.conf.example_ included in the Portage distribution.
+
+
+Compiled bytecode-related warnings
+==================================
+To improve performance, the Python interpreter compiles Python sources
+into bytecode.  CPython and PyPy3 feature three optimization levels
+that impact the bytecode size:
+
+1. no optimizations (the default)
+
+2. ``-O`` that removes assert statements from code
+
+3. ``-OO`` that removes assert statements and docstrings
+
+Normally, the compiled bytecode is stored on disk in ``.pyc`` files
+(historically, Python 2 has also used ``.pyo`` files).
+When these files are present and up-to-date, Python loads
+the precompiled bytecode from them rather than creating it from
+the source code, improving module loading time.  When they are missing,
+Python normally creates them automatically if it has write permissions
+to the respective directory.
+
+In Gentoo, we aim for packages to always byte-compile all their Python
+files to all supported optimization levels.  Besides improving module
+loading performance, it ensures that the Python interpreters will not
+attempt to write compiled bytecode themselves, effectively creating
+files that are not monitored by the package manager (and therefore e.g.
+are not removed when the respective package is uninstalled) or causing
+sandbox violations while building other packages.
+
+The Gentoo repository features a QA check to ensure that all installed
+Python modules are byte-compiled for all optimization levels supported
+by the respective Python interpreter, and that no stray compiled files
+exist.  This check is implemented using an auxiliary command found
+in ``app-portage/gpep517-7`` and newer.  This check can also be run
+manually (with machine-readable output) using e.g.::
+
+    $ python3.10 -m gpep517 verify-pyc --destdir=/tmp/portage/dev-python/trimesh-3.12.9/image
+    missing:/usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.opt-1.pyc:/usr/lib/python3.10/site-packages/trimesh/resources/templates/blender_boolean.py
+    missing:/usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.opt-2.pyc:/usr/lib/python3.10/site-packages/trimesh/resources/templates/blender_boolean.py
+    missing:/usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.pyc:/usr/lib/python3.10/site-packages/trimesh/resources/templates/blender_boolean.py
+
+
+Modules are not byte-compiled
+-----------------------------
+The most common QA warning that can be noticed while building packages
+indicates that at least some of the expected ``.pyc`` files are missing.
+For example::
+
+     * QA Notice: This package installs one or more Python modules that are
+     * not byte-compiled.
+     * The following files are missing:
+     *
+     *   /usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.opt-1.pyc
+     *   /usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.opt-2.pyc
+     *   /usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.pyc
+
+     * QA Notice: This package installs one or more Python modules that are
+     * not byte-compiled.
+     * The following files are missing:
+     *
+     *   /usr/lib/python3.10/site-packages/blueman/__pycache__/Constants.cpython-310.opt-2.pyc
+     *   /usr/lib/python3.10/site-packages/blueman/__pycache__/DeviceClass.cpython-310.opt-2.pyc
+     *   /usr/lib/python3.10/site-packages/blueman/__pycache__/Functions.cpython-310.opt-2.pyc
+     *   /usr/lib/python3.10/site-packages/blueman/__pycache__/Sdp.cpython-310.opt-2.pyc
+     [...]
+
+There are three common causes for these warnings:
+
+1. The package's build system nor the ebuild do not byte-compile
+   installed Python modules — the warning lists all optimization levels
+   for all installed modules.
+
+2. The package's build system byte-compiles installed modules only for
+   a subset of optimization levels — the warning lists all modules
+   but only for a subset of levels (the second example in the example
+   snippet).
+
+3. The package installs ``.py`` files with incorrect syntax that can not
+   be byte-compiled and usually trigger syntax errors during the install
+   phase (the first example in the above snippet).
+
+For the first two cases, the better solution is to patch the respective
+build system to perform byte-compilation for all optimization levels.
+An acceptable workaround is to call ``python_optimize`` from the ebuild
+(note that in PEP517 mode, distutils-r1 does that unconditionally).
+
+For the third case, the only real solution is to submit a fix upstream
+that renames files that do not contain valid Python modules to use
+another suffix.  For example, the template triggering the QA warning
+in trimesh package could be renamed from ``.py`` to ``.py.tmpl``.
+
+
+Stray compiled bytecode
+-----------------------
+The following QA warning indicates that there are stray ``.pyc`` files
+that are not clearly matching any installed Python module-implementation
+pair::
+
+     * QA Notice: This package installs one or more compiled Python modules
+     * that do not match installed modules (or their implementation).
+     * The following files are stray:
+     *
+     *   /usr/lib/python3.10/site-packages/SCons/Tool/docbook/__pycache__/__init__.cpython-35.pyc
+     *   /usr/lib/python3.10/site-packages/SCons/Tool/docbook/__pycache__/__init__.cpython-36.pyc
+     *   /usr/lib/python3.10/site-packages/SCons/Tool/docbook/__pycache__/__init__.cpython-38.pyc
+
+There are two common causes for this:
+
+1. The package is shipping precompiled ``.pyc`` files and installing
+   them along with ``.py`` modules.  The ebuild should remove the stray
+   files in ``src_prepare`` then.
+
+2. The ebuild is attempting to remove some ``.py`` files after they have
+   been byte-compiled.  It needs to be modified to either remove them
+   prior to the byte-compilation stage, or to fix the build system
+   not to install them in the first place.
+
+
+.. _make.conf.example:
+   https://gitweb.gentoo.org/proj/portage.git/tree/cnf/make.conf.example#n330
diff --git a/guide/genindex.html b/guide/genindex.html
index b4484b0..68806c2 100644
--- a/guide/genindex.html
+++ b/guide/genindex.html
@@ -343,6 +343,7 @@
 <li class="toctree-l1"><a class="reference internal" href="buildsys.html">Integration with build systems written in Python</a></li>
 <li class="toctree-l1"><a class="reference internal" href="porting.html">Porting tips</a></li>
 <li class="toctree-l1"><a class="reference internal" href="migration.html">Migration guides</a></li>
+<li class="toctree-l1"><a class="reference internal" href="qawarn.html">QA checks and warnings</a></li>
 <li class="toctree-l1"><a class="reference internal" href="package-maintenance.html">Python package maintenance</a></li>
 <li class="toctree-l1"><a class="reference internal" href="interpreter-maintenance.html">Maintenance of Python implementations</a></li>
 </ul>
diff --git a/guide/index.html b/guide/index.html
index 355e85b..004e0fb 100644
--- a/guide/index.html
+++ b/guide/index.html
@@ -192,6 +192,11 @@
 <li class="toctree-l2"><a class="reference internal" href="migration.html#migrating-to-pep-517-builds">Migrating to PEP 517 builds</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="qawarn.html">QA checks and warnings</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="qawarn.html#improved-qa-warning-reporting-in-portage">Improved QA warning reporting in Portage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="qawarn.html#compiled-bytecode-related-warnings">Compiled bytecode-related warnings</a></li>
+</ul>
+</li>
 <li class="toctree-l1"><a class="reference internal" href="package-maintenance.html">Python package maintenance</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="package-maintenance.html#support-for-python-2">Support for Python 2</a></li>
 <li class="toctree-l2"><a class="reference internal" href="package-maintenance.html#which-implementations-to-test-new-packages-for">Which implementations to test new packages for?</a></li>
@@ -256,6 +261,7 @@
 <li class="toctree-l1"><a class="reference internal" href="buildsys.html">Integration with build systems written in Python</a></li>
 <li class="toctree-l1"><a class="reference internal" href="porting.html">Porting tips</a></li>
 <li class="toctree-l1"><a class="reference internal" href="migration.html">Migration guides</a></li>
+<li class="toctree-l1"><a class="reference internal" href="qawarn.html">QA checks and warnings</a></li>
 <li class="toctree-l1"><a class="reference internal" href="package-maintenance.html">Python package maintenance</a></li>
 <li class="toctree-l1"><a class="reference internal" href="interpreter-maintenance.html">Maintenance of Python implementations</a></li>
 </ul>
diff --git a/guide/objects.inv b/guide/objects.inv
index c5c212a..3083903 100644
--- a/guide/objects.inv
+++ b/guide/objects.inv
diff --git a/guide/qawarn.html b/guide/qawarn.html
new file mode 100644
index 0000000..931911f
--- /dev/null
+++ b/guide/qawarn.html
@@ -0,0 +1,261 @@
+
+<!DOCTYPE html>
+
+<html lang="en">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
+
+    <title>QA checks and warnings &#8212; Gentoo Python Guide  documentation</title>
+    <link rel="stylesheet" type="text/css" href="_static/pygments.css" />
+    <link rel="stylesheet" type="text/css" href="_static/alabaster.css" />
+    <script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
+    <script src="_static/jquery.js"></script>
+    <script src="_static/underscore.js"></script>
+    <script src="_static/_sphinx_javascript_frameworks_compat.js"></script>
+    <script src="_static/doctools.js"></script>
+    <link rel="index" title="Index" href="genindex.html" />
+    <link rel="search" title="Search" href="search.html" />
+    <link rel="next" title="Python package maintenance" href="package-maintenance.html" />
+    <link rel="prev" title="Migration guides" href="migration.html" />
+   
+  <link rel="stylesheet" href="_static/custom.css" type="text/css" />
+  
+  
+  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
+
+  </head><body>
+  
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+          
+
+          <div class="body" role="main">
+            
+  <section id="qa-checks-and-warnings">
+<h1>QA checks and warnings<a class="headerlink" href="#qa-checks-and-warnings" title="Permalink to this heading">¶</a></h1>
+<p>This section explains Python-related QA checks and the resulting QA
+warnings that can be output while running the package manager or related
+tooling.</p>
+<section id="improved-qa-warning-reporting-in-portage">
+<h2>Improved QA warning reporting in Portage<a class="headerlink" href="#improved-qa-warning-reporting-in-portage" title="Permalink to this heading">¶</a></h2>
+<p>Normally, Portage outputs QA warnings at specific phases of the build
+process.  They are usually interspersed with other verbose output,
+and they are easy to miss, especially when building multiple packages
+in a single batch.</p>
+<p>To make them easier to catch, Portage’s elog system can be used
+to repeat all the QA warnings once emerge exits.  The required “echo”
+module is already enabled by default, however it skips QA warnings
+by default.  To change that, set in your <code class="docutils literal notranslate"><span class="pre">make.conf</span></code>:</p>
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="nv">PORTAGE_ELOG_CLASSES</span><span class="o">=</span><span class="s2">&quot;log warn error qa&quot;</span>
+</pre></div>
+</div>
+<p>For more information on using Portage’s elog system, please refer
+to <a class="reference external" href="https://gitweb.gentoo.org/proj/portage.git/tree/cnf/make.conf.example#n330">make.conf.example</a> included in the Portage distribution.</p>
+</section>
+<section id="compiled-bytecode-related-warnings">
+<h2>Compiled bytecode-related warnings<a class="headerlink" href="#compiled-bytecode-related-warnings" title="Permalink to this heading">¶</a></h2>
+<p>To improve performance, the Python interpreter compiles Python sources
+into bytecode.  CPython and PyPy3 feature three optimization levels
+that impact the bytecode size:</p>
+<ol class="arabic simple">
+<li><p>no optimizations (the default)</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">-O</span></code> that removes assert statements from code</p></li>
+<li><p><code class="docutils literal notranslate"><span class="pre">-OO</span></code> that removes assert statements and docstrings</p></li>
+</ol>
+<p>Normally, the compiled bytecode is stored on disk in <code class="docutils literal notranslate"><span class="pre">.pyc</span></code> files
+(historically, Python 2 has also used <code class="docutils literal notranslate"><span class="pre">.pyo</span></code> files).
+When these files are present and up-to-date, Python loads
+the precompiled bytecode from them rather than creating it from
+the source code, improving module loading time.  When they are missing,
+Python normally creates them automatically if it has write permissions
+to the respective directory.</p>
+<p>In Gentoo, we aim for packages to always byte-compile all their Python
+files to all supported optimization levels.  Besides improving module
+loading performance, it ensures that the Python interpreters will not
+attempt to write compiled bytecode themselves, effectively creating
+files that are not monitored by the package manager (and therefore e.g.
+are not removed when the respective package is uninstalled) or causing
+sandbox violations while building other packages.</p>
+<p>The Gentoo repository features a QA check to ensure that all installed
+Python modules are byte-compiled for all optimization levels supported
+by the respective Python interpreter, and that no stray compiled files
+exist.  This check is implemented using an auxiliary command found
+in <code class="docutils literal notranslate"><span class="pre">app-portage/gpep517-7</span></code> and newer.  This check can also be run
+manually (with machine-readable output) using e.g.:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>$ python3.10 -m gpep517 verify-pyc --destdir=/tmp/portage/dev-python/trimesh-3.12.9/image
+missing:/usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.opt-1.pyc:/usr/lib/python3.10/site-packages/trimesh/resources/templates/blender_boolean.py
+missing:/usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.opt-2.pyc:/usr/lib/python3.10/site-packages/trimesh/resources/templates/blender_boolean.py
+missing:/usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.pyc:/usr/lib/python3.10/site-packages/trimesh/resources/templates/blender_boolean.py
+</pre></div>
+</div>
+<section id="modules-are-not-byte-compiled">
+<h3>Modules are not byte-compiled<a class="headerlink" href="#modules-are-not-byte-compiled" title="Permalink to this heading">¶</a></h3>
+<p>The most common QA warning that can be noticed while building packages
+indicates that at least some of the expected <code class="docutils literal notranslate"><span class="pre">.pyc</span></code> files are missing.
+For example:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>* QA Notice: This package installs one or more Python modules that are
+* not byte-compiled.
+* The following files are missing:
+*
+*   /usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.opt-1.pyc
+*   /usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.opt-2.pyc
+*   /usr/lib/python3.10/site-packages/trimesh/resources/templates/__pycache__/blender_boolean.cpython-310.pyc
+
+* QA Notice: This package installs one or more Python modules that are
+* not byte-compiled.
+* The following files are missing:
+*
+*   /usr/lib/python3.10/site-packages/blueman/__pycache__/Constants.cpython-310.opt-2.pyc
+*   /usr/lib/python3.10/site-packages/blueman/__pycache__/DeviceClass.cpython-310.opt-2.pyc
+*   /usr/lib/python3.10/site-packages/blueman/__pycache__/Functions.cpython-310.opt-2.pyc
+*   /usr/lib/python3.10/site-packages/blueman/__pycache__/Sdp.cpython-310.opt-2.pyc
+[...]
+</pre></div>
+</div>
+<p>There are three common causes for these warnings:</p>
+<ol class="arabic simple">
+<li><p>The package’s build system nor the ebuild do not byte-compile
+installed Python modules — the warning lists all optimization levels
+for all installed modules.</p></li>
+<li><p>The package’s build system byte-compiles installed modules only for
+a subset of optimization levels — the warning lists all modules
+but only for a subset of levels (the second example in the example
+snippet).</p></li>
+<li><p>The package installs <code class="docutils literal notranslate"><span class="pre">.py</span></code> files with incorrect syntax that can not
+be byte-compiled and usually trigger syntax errors during the install
+phase (the first example in the above snippet).</p></li>
+</ol>
+<p>For the first two cases, the better solution is to patch the respective
+build system to perform byte-compilation for all optimization levels.
+An acceptable workaround is to call <code class="docutils literal notranslate"><span class="pre">python_optimize</span></code> from the ebuild
+(note that in PEP517 mode, distutils-r1 does that unconditionally).</p>
+<p>For the third case, the only real solution is to submit a fix upstream
+that renames files that do not contain valid Python modules to use
+another suffix.  For example, the template triggering the QA warning
+in trimesh package could be renamed from <code class="docutils literal notranslate"><span class="pre">.py</span></code> to <code class="docutils literal notranslate"><span class="pre">.py.tmpl</span></code>.</p>
+</section>
+<section id="stray-compiled-bytecode">
+<h3>Stray compiled bytecode<a class="headerlink" href="#stray-compiled-bytecode" title="Permalink to this heading">¶</a></h3>
+<p>The following QA warning indicates that there are stray <code class="docutils literal notranslate"><span class="pre">.pyc</span></code> files
+that are not clearly matching any installed Python module-implementation
+pair:</p>
+<div class="highlight-text notranslate"><div class="highlight"><pre><span></span>* QA Notice: This package installs one or more compiled Python modules
+* that do not match installed modules (or their implementation).
+* The following files are stray:
+*
+*   /usr/lib/python3.10/site-packages/SCons/Tool/docbook/__pycache__/__init__.cpython-35.pyc
+*   /usr/lib/python3.10/site-packages/SCons/Tool/docbook/__pycache__/__init__.cpython-36.pyc
+*   /usr/lib/python3.10/site-packages/SCons/Tool/docbook/__pycache__/__init__.cpython-38.pyc
+</pre></div>
+</div>
+<p>There are two common causes for this:</p>
+<ol class="arabic simple">
+<li><p>The package is shipping precompiled <code class="docutils literal notranslate"><span class="pre">.pyc</span></code> files and installing
+them along with <code class="docutils literal notranslate"><span class="pre">.py</span></code> modules.  The ebuild should remove the stray
+files in <code class="docutils literal notranslate"><span class="pre">src_prepare</span></code> then.</p></li>
+<li><p>The ebuild is attempting to remove some <code class="docutils literal notranslate"><span class="pre">.py</span></code> files after they have
+been byte-compiled.  It needs to be modified to either remove them
+prior to the byte-compilation stage, or to fix the build system
+not to install them in the first place.</p></li>
+</ol>
+</section>
+</section>
+</section>
+
+
+          </div>
+          
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="index.html">Gentoo Python Guide</a></h1>
+
+
+
+
+
+
+
+
+<h3>Navigation</h3>
+<p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
+<ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="preface.html">Preface</a></li>
+<li class="toctree-l1"><a class="reference internal" href="interpreter.html">Python interpreters</a></li>
+<li class="toctree-l1"><a class="reference internal" href="eclass.html">Choosing between Python eclasses</a></li>
+<li class="toctree-l1"><a class="reference internal" href="basic.html">Common basics</a></li>
+<li class="toctree-l1"><a class="reference internal" href="any.html">python-any-r1 — build-time dependency</a></li>
+<li class="toctree-l1"><a class="reference internal" href="single.html">python-single-r1 — single-impl packages</a></li>
+<li class="toctree-l1"><a class="reference internal" href="multi.html">python-r1 — multi-impl packages</a></li>
+<li class="toctree-l1"><a class="reference internal" href="distutils.html">distutils-r1 — standard Python build systems</a></li>
+<li class="toctree-l1"><a class="reference internal" href="distutils-legacy.html">distutils-r1 legacy concepts</a></li>
+<li class="toctree-l1"><a class="reference internal" href="helper.html">Common helper functions</a></li>
+<li class="toctree-l1"><a class="reference internal" href="depend.html">Advanced dependencies</a></li>
+<li class="toctree-l1"><a class="reference internal" href="test.html">Resolving test suite problems</a></li>
+<li class="toctree-l1"><a class="reference internal" href="pytest.html">pytest recipes</a></li>
+<li class="toctree-l1"><a class="reference internal" href="concept.html">Advanced concepts</a></li>
+<li class="toctree-l1"><a class="reference internal" href="expert-multi.html">Expert python-r1 usage</a></li>
+<li class="toctree-l1"><a class="reference internal" href="buildsys.html">Integration with build systems written in Python</a></li>
+<li class="toctree-l1"><a class="reference internal" href="porting.html">Porting tips</a></li>
+<li class="toctree-l1"><a class="reference internal" href="migration.html">Migration guides</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">QA checks and warnings</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#improved-qa-warning-reporting-in-portage">Improved QA warning reporting in Portage</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#compiled-bytecode-related-warnings">Compiled bytecode-related warnings</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="package-maintenance.html">Python package maintenance</a></li>
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diff --git a/guide/search.html b/guide/search.html
index fc71022..ea76f15 100644
--- a/guide/search.html
+++ b/guide/search.html
@@ -104,6 +104,7 @@
 <li class="toctree-l1"><a class="reference internal" href="buildsys.html">Integration with build systems written in Python</a></li>
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diff --git a/guide/searchindex.js b/guide/searchindex.js
index bd4bad3..5c7041c 100644
--- a/guide/searchindex.js
+++ b/guide/searchindex.js
@@ -1 +1 @@
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