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| author |   Pavel Sanda <ps@twin.jikos.cz> | 2012-08-17 01:46:06 +0200 |
|---|---|---|
| committer | Pavel Sanda <ps@twin.jikos.cz> | 2012-08-17 01:46:06 +0200 |
| commit | 7bc0b5e689f74d6ffd5120a1ee5ee15c6af3989a (patch) | |
| tree | 4f96b345f7afe4b130ee4dfd59608a321c10957b /sci-biology | |
| parent | xpdf ebuilds deps (diff) | |
| download | rebutia-7bc0b5e689f74d6ffd5120a1ee5ee15c6af3989a.tar.gz rebutia-7bc0b5e689f74d6ffd5120a1ee5ee15c6af3989a.tar.bz2 rebutia-7bc0b5e689f74d6ffd5120a1ee5ee15c6af3989a.zip | |
Add cytoscape ebuild from bugzilla and update it for 2.8.3.
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/cytoscape/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/cytoscape/cytoscape-2.8.3.ebuild | 41 |
2 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/cytoscape/Manifest b/sci-biology/cytoscape/Manifest new file mode 100644 index 0000000..e6d5a8e --- /dev/null +++ b/sci-biology/cytoscape/Manifest @@ -0,0 +1,2 @@ +DIST cytoscape-2.8.3.tar.gz 89722604 SHA256 7157e50582c0ec35ec66ba5cc65a36c041123577e3f8c17c48ff6457f5a008f2 SHA512 682edc4a864026584fc0f8e040acc3f2a9a4baa2c137bb9f1eb23e653c1c92930c4bc95648506fc91b8da22048b61e969e2a053e2907a715ed8576bd17676331 WHIRLPOOL 37f4b0bff54084f294d0bed511c0c9849fca13b91c7b3e5058fda21d694aa0289a976642c8dcbc96e8b5a6ae86511219f0aaad48543a2f63ac7e9afd5df45028 +EBUILD cytoscape-2.8.3.ebuild 1438 SHA256 0b07a77c264590a838b3dcb2c939c0e9274a9698e4e17143970720cf9614a96d SHA512 17675e0bca83dd6f3c5de492bc2ceefd90dc073fbdf1739c3b10598f8479fdbc433141d6572874022fd93f575cf2eedcf5d36c3f091610c040bd0eb28029e1f7 WHIRLPOOL 664b7f28d6f6e2b45ec26b3042a1dd719d15c23476cd22c1ffd7db24b09d6364a498f125de4af72d26b8122c1ca501fb756731d958c37e6027381f4d7612ce33 diff --git a/sci-biology/cytoscape/cytoscape-2.8.3.ebuild b/sci-biology/cytoscape/cytoscape-2.8.3.ebuild new file mode 100644 index 0000000..41d7fb9 --- /dev/null +++ b/sci-biology/cytoscape/cytoscape-2.8.3.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI="2" + +EANT_ANT_TASKS="jakarta-regexp-1.4 batik-1.7 xalan xsdlib relaxng-datatype jaxb-2" +EANT_GENTOO_CLASSPATH="swing-layout-1,stax-ex,xmlstreambuffer,sjsxp,concurrent-util,jsr173,jsr181,jsr250,fastinfoset,junit,batik-1.7,freehep-graphicsio-svg,freehep-util,freehep-xml,freehep-export,freehep-graphicsio,freehep-graphicsio-java,freehep-swing,freehep-graphicsio-ps,freehep-io,freehep-graphics2d,freehep-misc-deps,itext,piccolo2d,tclib" +JAVA_ANT_REWRITE_CLASSPATH="true" + +inherit versionator java-pkg-2 java-ant-2 eutils + +MY_PV=$(replace_all_version_separators '_') + +DESCRIPTION="A visualization platform for molecular interaction networks" +HOMEPAGE="http://www.cytoscape.org/" +SRC_URI="http://chianti.ucsd.edu/Cyto-2_8-beta/cytoscape-2.8.3.tar.gz" + +LICENSE="LGPL-2.1" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" +DEPEND=">=virtual/jdk-1.6" +RDEPEND=">=virtual/jre-1.6" + +S="${WORKDIR}/${PN}-2.8.3" + +src_install() { + java-pkg_dojar cytoscape.jar + java-pkg_jarinto /usr/share/${PN}/plugins + java-pkg_dojar plugins/*.jar + + insinto /usr/share/${PN} + + # replacement for resources/bin/cytoscape.sh + java-pkg_dolauncher cytoscape.sh --main cytoscape.CyMain \ + --java_args '-Dswing.aatext=true -Dawt.useSystemAAFontSettings=lcd -Xss10M -Xmx2000M' \ + --pkg_args '-p '/usr/share/${PN}/plugins' \"$@\"' + + dodoc docs/manual.pdf +} |