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authorJustin Lecher <jlec@gentoo.org>2014-01-14 14:12:44 +0000
committerJustin Lecher <jlec@gentoo.org>2014-01-14 14:12:44 +0000
commit7d764a22675fbf6acf47061f4733f141dadadf28 (patch)
tree1bccfb7e057ff7765ace72172f24e230a390ba87 /sci-biology
parentdev-tcltk/tkimg: Drop old (diff)
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sci-biology/mira: Drop old
(Portage version: 2.2.8/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/mira/ChangeLog5
-rw-r--r--sci-biology/mira/mira-3.2.1.ebuild60
2 files changed, 4 insertions, 61 deletions
diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog
index 98710cefd1c3..3a24d92ccb6e 100644
--- a/sci-biology/mira/ChangeLog
+++ b/sci-biology/mira/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/mira
# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.26 2014/01/14 13:52:56 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.27 2014/01/14 14:12:44 jlec Exp $
+
+ 14 Jan 2014; Justin Lecher <jlec@gentoo.org> -mira-3.2.1.ebuild:
+ Drop old
14 Jan 2014; Agostino Sarubbo <ago@gentoo.org> mira-3.9.18.ebuild:
Stable for x86, wrt bug #497218
diff --git a/sci-biology/mira/mira-3.2.1.ebuild b/sci-biology/mira/mira-3.2.1.ebuild
deleted file mode 100644
index 18c11397fe2f..000000000000
--- a/sci-biology/mira/mira-3.2.1.ebuild
+++ /dev/null
@@ -1,60 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.2.1.ebuild,v 1.8 2014/01/06 15:30:02 jlec Exp $
-
-EAPI="3"
-
-MIRA_3RDPARTY_PV="17-04-2010"
-
-inherit autotools eutils multilib
-
-DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
-HOMEPAGE="http://www.chevreux.org/projects_mira.html"
-SRC_URI="
- mirror://sourceforge/mira-assembler/${P}.tar.bz2
- mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2"
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x86-macos"
-IUSE=""
-
-CDEPEND="
- dev-libs/boost
- dev-util/google-perftools"
-DEPEND="${CDEPEND}
- dev-libs/expat"
-RDEPEND="${CDEPEND}"
-
-DOCS=( AUTHORS GETTING_STARTED NEWS README HELP_WANTED
- THANKS doc/3rdparty/scaffolding_MIRA_BAMBUS.pdf )
-
-src_prepare() {
- find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die
- epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch
- AT_M4DIR="config/m4" eautoreconf
-}
-
-src_configure() {
- econf \
- --with-boost="${EPREFIX}/usr/$(get_libdir)" \
- --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \
- --with-boost-thread=boost_thread-mt
-}
-
-#src_compile() {
-# base_src_compile
-# # TODO: resolve docbook incompatibility for building docs
-# #if use doc; then emake -C doc clean docs || die; fi
-#}
-
-src_install() {
- emake DESTDIR="${D}" install
- dodoc ${DOCS[@]}
- dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl} || die
-}
-
-pkg_postinst() {
- einfo "Documentation is no longer built, you can find it at:"
- einfo "http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html"
-}