diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/mira/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/mira/mira-3.2.1.ebuild | 60 |
2 files changed, 4 insertions, 61 deletions
diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog index 98710cefd1c3..3a24d92ccb6e 100644 --- a/sci-biology/mira/ChangeLog +++ b/sci-biology/mira/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/mira # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.26 2014/01/14 13:52:56 ago Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.27 2014/01/14 14:12:44 jlec Exp $ + + 14 Jan 2014; Justin Lecher <jlec@gentoo.org> -mira-3.2.1.ebuild: + Drop old 14 Jan 2014; Agostino Sarubbo <ago@gentoo.org> mira-3.9.18.ebuild: Stable for x86, wrt bug #497218 diff --git a/sci-biology/mira/mira-3.2.1.ebuild b/sci-biology/mira/mira-3.2.1.ebuild deleted file mode 100644 index 18c11397fe2f..000000000000 --- a/sci-biology/mira/mira-3.2.1.ebuild +++ /dev/null @@ -1,60 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.2.1.ebuild,v 1.8 2014/01/06 15:30:02 jlec Exp $ - -EAPI="3" - -MIRA_3RDPARTY_PV="17-04-2010" - -inherit autotools eutils multilib - -DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina" -HOMEPAGE="http://www.chevreux.org/projects_mira.html" -SRC_URI=" - mirror://sourceforge/mira-assembler/${P}.tar.bz2 - mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2" - -SLOT="0" -LICENSE="GPL-2" -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux ~x86-macos" -IUSE="" - -CDEPEND=" - dev-libs/boost - dev-util/google-perftools" -DEPEND="${CDEPEND} - dev-libs/expat" -RDEPEND="${CDEPEND}" - -DOCS=( AUTHORS GETTING_STARTED NEWS README HELP_WANTED - THANKS doc/3rdparty/scaffolding_MIRA_BAMBUS.pdf ) - -src_prepare() { - find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die - epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch - AT_M4DIR="config/m4" eautoreconf -} - -src_configure() { - econf \ - --with-boost="${EPREFIX}/usr/$(get_libdir)" \ - --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)" \ - --with-boost-thread=boost_thread-mt -} - -#src_compile() { -# base_src_compile -# # TODO: resolve docbook incompatibility for building docs -# #if use doc; then emake -C doc clean docs || die; fi -#} - -src_install() { - emake DESTDIR="${D}" install - dodoc ${DOCS[@]} - dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl} || die -} - -pkg_postinst() { - einfo "Documentation is no longer built, you can find it at:" - einfo "http://mira-assembler.sourceforge.net/docs/DefinitiveGuideToMIRA.html" -} |