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* sci-biology/phylip: Respect LDFLAGS, #337921Justin Lecher2013-02-171-14/+13
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/phylip: Respect LDFLAGS, #337921Justin Lecher2013-02-174-54/+65
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Force sse2 support by the cpu, #337401Justin Lecher2013-02-171-5/+5
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Force sse2 support by the cpu, #337401Justin Lecher2013-02-172-3/+10
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/sibsim4: Respect CC, CFLAGS and LDFLAGS, #328431Justin Lecher2013-02-171-11/+11
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/sibsim4: Respect CC, CFLAGS and LDFLAGS, #328431Justin Lecher2013-02-173-11/+23
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bfast: Build in source for testsJustin Lecher2013-02-171-5/+5
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bfast: Build in source for testsJustin Lecher2013-02-172-3/+8
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/phrap: Add missing deps, thanks Martin Mokrejš for the patchJustin Lecher2013-02-171-4/+14
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/phrap: Add missing deps, thanks Martin Mokrejš for the patchJustin Lecher2013-02-173-10/+19
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/consed: Quote EPREFIX, thanks Martin Mokrejš for the patchJustin Lecher2013-02-171-17/+7
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/consed: Quote EPREFIX, thanks Martin Mokrejš for the patchJustin Lecher2013-02-173-11/+15
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bfast: Drop old; move to autotools-utils; install docs in right ↵Justin Lecher2013-02-171-12/+9
| | | | | | place, #304603 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/bfast: Drop old; move to autotools-utils; install docs in right ↵Justin Lecher2013-02-175-78/+23
| | | | | | place, #304603 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mcl: Version BUmp; move to autotools-utils; install docs in ↵Justin Lecher2013-02-171-7/+9
| | | | | | right place, #296893 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/mcl: Version BUmp; move to autotools-utils; install docs in ↵Justin Lecher2013-02-174-13/+71
| | | | | | right place, #296893 (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Drop old; block collision with emboss, #450426; move to ↵Justin Lecher2013-02-171-20/+8
| | | | | | new python eclasses (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/shrimp: Drop old; block collision with emboss, #450426; move to ↵Justin Lecher2013-02-175-76/+38
| | | | | | new python eclasses (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/primer3: Version BumpJustin Lecher2013-02-141-5/+7
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/primer3: Version BumpJustin Lecher2013-02-142-2/+53
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vienna-rna: Version Bump; move to EAPI=5, new python eclasses; ↵Justin Lecher2013-02-131-5/+11
| | | | | | autotools-utils (Portage version: 2.2.0_alpha162/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/vienna-rna: Version Bump; move to EAPI=5, new python eclasses; ↵Justin Lecher2013-02-136-1/+203
| | | | | | autotools-utils (Portage version: 2.2.0_alpha162/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Specify LICENSE more precisely, see LICENSE file, bug 455566.Ulrich Müller2013-02-051-4/+24
| | | | (Portage version: 2.1.11.50/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Specify LICENSE more precisely, see LICENSE file, bug 455566.Ulrich Müller2013-02-054-7/+11
| | | | (Portage version: 2.1.11.50/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Add ~ppc, wrt bug #452010Agostino Sarubbo2013-02-031-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Add ~ppc, wrt bug #452010Agostino Sarubbo2013-02-032-4/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* sci-biology/readseq: Drop old; Resolve file collision sci-biology/meme, #455010Justin Lecher2013-02-011-16/+13
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/readseq: Drop old; Resolve file collision sci-biology/meme, #455010Justin Lecher2013-02-015-68/+16
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Resolve file collision with app-text and ↵Justin Lecher2013-02-011-5/+6
| | | | | | sci-biology/readseq, #455010 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Resolve file collision with app-text and ↵Justin Lecher2013-02-013-5/+96
| | | | | | sci-biology/readseq, #455010 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/augustus: Drop old, fixes multiple QA issues, #454822Justin Lecher2013-01-311-8/+12
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/augustus: Drop old, fixes multiple QA issues, #454822Justin Lecher2013-01-315-119/+10
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Stable for x86, wrt bug #454842Agostino Sarubbo2013-01-311-2/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for x86, wrt bug #454842Agostino Sarubbo2013-01-312-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #454842Agostino Sarubbo2013-01-311-21/+11
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #454842Agostino Sarubbo2013-01-312-6/+8
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/vienna-rna: Only call distutils phase functions with USE=python, ↵Justin Lecher2013-01-311-8/+7
| | | | | | #422899 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/vienna-rna: Only call distutils phase functions with USE=python, ↵Justin Lecher2013-01-313-6/+18
| | | | | | #422899 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Drop old, fixes bug 297070 & bug 454662Justin Lecher2013-01-311-4/+12
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Drop old, fixes bug 297070 & bug 454662Justin Lecher2013-01-313-68/+7
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Stable for x86, wrt bug #454698Agostino Sarubbo2013-01-301-2/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for x86, wrt bug #454698Agostino Sarubbo2013-01-302-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #454698Agostino Sarubbo2013-01-301-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #454698Agostino Sarubbo2013-01-302-4/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/meme: Drop old; add examples handlingJustin Lecher2013-01-301-10/+6
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Drop old; add examples handlingJustin Lecher2013-01-305-139/+14
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bamtools: Version Bump; #452234; unbundles dev-libs/jsoncppJustin Lecher2013-01-281-8/+11
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bamtools: Version Bump; #452234; unbundles dev-libs/jsoncppJustin Lecher2013-01-284-12/+91
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/samtools: Add missing deps and correct sed lines, #454134; ↵Justin Lecher2013-01-271-5/+5
| | | | | | thanks Torsten Veller (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/samtools: Add missing deps and correct sed lines, #454134; ↵Justin Lecher2013-01-272-5/+15
| | | | | | thanks Torsten Veller (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)