New upstream version

Package-Manager: portage-2.1.1-r1

4 files changed, 54 insertions, 5 deletions

diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog
index 0d86f76787b0..262a0ff6f6c2 100644
--- a/sci-biology/primer3/ChangeLog
+++ b/sci-biology/primer3/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/primer3
 # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.12 2006/11/02 19:08:34 grobian Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.13 2006/11/03 01:52:10 ribosome Exp $
+
+*primer3-1.0b (03 Nov 2006)
+
+  03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> +primer3-1.0b.ebuild:
+  New upstream version.
 
   02 Nov 2006; Fabian Groffen <grobian@gentoo.org> primer3-1.0.0.ebuild:
   Dropped ppc-macos, see you in prefix.
diff --git a/sci-biology/primer3/Manifest b/sci-biology/primer3/Manifest
index e4163388e141..6959be6edf4f 100644
--- a/sci-biology/primer3/Manifest
+++ b/sci-biology/primer3/Manifest
@@ -1,12 +1,17 @@
 DIST primer3_1.0.0.tar.gz 936696 RMD160 c08329cafcb8bf702a1654b4348a418b20e55c88 SHA1 0227f1f26c8b45dff9033543bee4387ade173c73 SHA256 fcbcf2e540e0062f3fa0d723b443b04a1c31e3e03e3aa5d97e3b2f910499f34b
+DIST primer3_1.0b.tar.gz 937824 RMD160 a0ab773aa7af3f8c158f46bf32c658776ba8ba2b SHA1 ea7ca4968437b02033f274c5033f7274b2f42d01 SHA256 54d3f1f7c20850b89f7f393c152afa9f9f93e0c29a58a45710973e13be07c9c7
 EBUILD primer3-1.0.0.ebuild 854 RMD160 33c4fd85db4f6f0cb59e8a3df76115b1dd5acd1f SHA1 9f5083f05e34f4ddcd4bfddbce9ffe9273d1360e SHA256 57c0f9b5fcecc6c501e75a4bcd88d0e5b6ecaf2e562b369cbf551ce8eeb4071e
 MD5 28730bf8d276dea79cfa528cf3d9d55d primer3-1.0.0.ebuild 854
 RMD160 33c4fd85db4f6f0cb59e8a3df76115b1dd5acd1f primer3-1.0.0.ebuild 854
 SHA256 57c0f9b5fcecc6c501e75a4bcd88d0e5b6ecaf2e562b369cbf551ce8eeb4071e primer3-1.0.0.ebuild 854
-MISC ChangeLog 2100 RMD160 dda3e1d5904f7806a0f6761ab2fa4690da9e3c05 SHA1 54ed53546afe86f56c64b7478a62424860936655 SHA256 3a335f5b98f69d6f0c7b30d1207b9613d30b2e8b13ae50232320560aecaa6f4a
-MD5 664267be8256dba5c2804626ac2d8081 ChangeLog 2100
-RMD160 dda3e1d5904f7806a0f6761ab2fa4690da9e3c05 ChangeLog 2100
-SHA256 3a335f5b98f69d6f0c7b30d1207b9613d30b2e8b13ae50232320560aecaa6f4a ChangeLog 2100
+EBUILD primer3-1.0b.ebuild 828 RMD160 d429cbc693fc0f79433c8b54f12bed43eec70612 SHA1 b4132756ed0c0e9b4008d55a8096a2211848eb9c SHA256 c04840d74a541e4fb0e21c5b9e046a7d6bb64611c16a2efd3091403ba7416e56
+MD5 4d55ba4aedb4c55ae5269c94f4030806 primer3-1.0b.ebuild 828
+RMD160 d429cbc693fc0f79433c8b54f12bed43eec70612 primer3-1.0b.ebuild 828
+SHA256 c04840d74a541e4fb0e21c5b9e046a7d6bb64611c16a2efd3091403ba7416e56 primer3-1.0b.ebuild 828
+MISC ChangeLog 2230 RMD160 b9c57cc75cb107b1fac6daec02bea2a6d7d80420 SHA1 c2fe0fe25a04701148c00e4a181ec49c98aa1fa1 SHA256 10d1f4ca26c352a9464c407080117eb1d0bdc3793e34febf814f99fe6a30da21
+MD5 71898559a64b4beee98f72ab2041f7f2 ChangeLog 2230
+RMD160 b9c57cc75cb107b1fac6daec02bea2a6d7d80420 ChangeLog 2230
+SHA256 10d1f4ca26c352a9464c407080117eb1d0bdc3793e34febf814f99fe6a30da21 ChangeLog 2230
 MISC metadata.xml 721 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 SHA1 7c1c44b75d2cf8549959e2947509e58cd6c433ed SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca
 MD5 8cdd554f8d2dc15deccdb6c23a375bab metadata.xml 721
 RMD160 52ec41dfbf0405bbf4d209a6c940ed519ef90f09 metadata.xml 721
@@ -14,3 +19,6 @@ SHA256 0add5594c686e3cf605ad8bba0ab855d92bbf75e019ef8b79c3ca802164244ca metadata
 MD5 91d7203581da4a746de7b12d26b929a6 files/digest-primer3-1.0.0 241
 RMD160 7ddf10bb30198b32859ce793e99b9bde3d585aa0 files/digest-primer3-1.0.0 241
 SHA256 e960b016d3d9583d0c812d4758b446570867e0a023366c91f83a0a0c8711ca9e files/digest-primer3-1.0.0 241
+MD5 1edcee8ca67f5d93725b5425d228b69b files/digest-primer3-1.0b 238
+RMD160 9360bf5faa05ab4b934ba1618f1c4d56b52e21db files/digest-primer3-1.0b 238
+SHA256 626655e18ba8d058d30c42dfd9eed65f04fc8287d613c56e2702d268c0450c4f files/digest-primer3-1.0b 238
diff --git a/sci-biology/primer3/files/digest-primer3-1.0b b/sci-biology/primer3/files/digest-primer3-1.0b
new file mode 100644
index 000000000000..2f903ec93404
--- /dev/null
+++ b/sci-biology/primer3/files/digest-primer3-1.0b
@@ -0,0 +1,3 @@
+MD5 6237b2c3ead5f361fe32bbd4d5cb9dfb primer3_1.0b.tar.gz 937824
+RMD160 a0ab773aa7af3f8c158f46bf32c658776ba8ba2b primer3_1.0b.tar.gz 937824
+SHA256 54d3f1f7c20850b89f7f393c152afa9f9f93e0c29a58a45710973e13be07c9c7 primer3_1.0b.tar.gz 937824
diff --git a/sci-biology/primer3/primer3-1.0b.ebuild b/sci-biology/primer3/primer3-1.0b.ebuild
new file mode 100644
index 000000000000..26f1f2ac7046
--- /dev/null
+++ b/sci-biology/primer3/primer3-1.0b.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-1.0b.ebuild,v 1.1 2006/11/03 01:52:10 ribosome Exp $
+
+DESCRIPTION="Design primers for PCR reactions."
+HOMEPAGE="http://frodo.wi.mit.edu/primer3/primer3_code.html"
+SRC_URI="http://frodo.wi.mit.edu/${PN}/${PN}_${PV}.tar.gz"
+LICENSE="whitehead"
+
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
+IUSE=""
+
+DEPEND="dev-lang/perl"
+
+RDEPEND=""
+
+S="${WORKDIR}/${PN}_${PV}/src"
+
+src_compile() {
+	emake -e || die
+}
+
+src_test () {
+	cd ../test
+	perl primer_test.pl primer3_core || die
+}
+
+src_install () {
+	dobin primer3_core || die "Could not install program."
+	dodoc ../{how-to-cite.txt,README.${PN}_${PV}.txt,example} || \
+			die "Could not install documentation."
+}