sci-biology/bamtools: Version Bump, drop old, #482636; thanks Martin Mokrejš for the patch

Package-Manager: portage-2.2.6/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

4 files changed, 51 insertions, 11 deletions

diff --git a/sci-biology/bamtools/ChangeLog b/sci-biology/bamtools/ChangeLog
index 5dc7e430bff4..095aee2c5f3a 100644
--- a/sci-biology/bamtools/ChangeLog
+++ b/sci-biology/bamtools/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/bamtools
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/ChangeLog,v 1.9 2013/08/27 14:59:18 jer Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/ChangeLog,v 1.10 2013/09/17 15:37:30 jlec Exp $
+
+*bamtools-2.3.0 (17 Sep 2013)
+
+  17 Sep 2013; Justin Lecher <jlec@gentoo.org> -bamtools-2.2.3.ebuild,
+  +bamtools-2.3.0.ebuild, +files/bamtools-2.3.0-unbundle.patch:
+  Version Bump, drop old, #482636; thanks Martin Mokrejš for the patch
 
   27 Aug 2013; Jeroen Roovers <jer@gentoo.org> metadata.xml:
   Update e-mail address.
diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index b50a459bcc58..8a7e61fee19d 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1,17 +1,28 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX bamtools-2.2.3-unbundle.patch 1154 SHA256 4ade9a27aae5f6dc7dc9fe6abfb6de15415225b0b4d75ffe7192e3c386f6ec4a SHA512 4cdbf362a0a5b98b983c9498f8ecc271af99c0ec26f429627a6b46790578df7c53aa3a606259fefb53ab1aaebb45759daa742dd1ebd050867d9c63c4837b3c2d WHIRLPOOL 4ff35916e778957cb557bcad98da060aad6666062a8f56545baa458db1ae9cd2d879b34786755980330ac3d87d3d61c6c51b14d2a5e5bb988ecfada99ee67a4d
+AUX bamtools-2.3.0-unbundle.patch 981 SHA256 05a1f2da16a6a3057e73f647c19a69998ab367bd5c9ee023098e01e14b81edb5 SHA512 3ee766b4e76f93cf82ed33b2995a4afeb6ba205cca367743f69cfb128dabb252777e41e88b8e66279eb1aa17d7f7e2cc34f2b8e808a3c2f18675a5ed10c53196 WHIRLPOOL 78032a1e35cefbbb823a145c79e30650de65880f0d5235ce779ae99ac56ce3213ef87ff349ce570c9a4785ac2d3e0145a60816452c9ea7c5a8a0b33d6b5bb1d0
 DIST bamtools-1.0.2.tar.gz 207523 SHA256 d3ca75d2bec531f15dbc400a76afbe48d47452ce05552c88943bbce81a0862d8 SHA512 1934d40d50f3fdf2b1fcacb8b59cf954a3c791d3095649ac4f1246563e9d8d4afe385e42a2c6c383f0bb519eede401d12c71203d279b33e01575222f9f84c244 WHIRLPOOL 9fb4d4feb3ff867866a96533231a1b8284fd5156ab142cad727d32f8f3c157e246cca59185c3bdc253b19bde2514404a7107a62443780b060f6e8f270622c990
-DIST bamtools-2.2.3.tar.gz 538074 SHA256 92ddef44801a1f8f01ce1a397f83e0f8b5e1ae8ad92c620f2dafaaf8d54cf178 SHA512 904823605875c160c4553ec34c307583c511a3e5469f06048d44196e1d3d35dab3f582360a914fcbb3ff214316dc49e68bf57f2bb40fb854fb37dfe329d308bc WHIRLPOOL 603e233f5f3d0b546844038716f0540dbb0541e84a25cb62fb706bdfa2b16fbe491526ea5b753be0ef93eb69bb8d8f56074b6904558ef7814e0e6e1698a0ebbf
+DIST bamtools-2.3.0.tar.gz 539446 SHA256 288046e6d5d41afdc5fce8608c5641cf2b8e670644587c1315b90bbe92f039af SHA512 432f66384cffc04ab6bc7dc66d8f7b79c1e468d0068db4cabb5cac05f9b6bef7968eff71ffb3ee51b84e23d9bb66a11ef267024138f40116c25e7f18e7210a5c WHIRLPOOL dd888f67c3d0b0ce2f5f2875e242e5df0d54cefd13693230b5f10eb57dd780304b601027cf65f6598a54061a7166903bf06c6c9a46939f6ce6bbb246cab89993
 EBUILD bamtools-1.0.2.ebuild 865 SHA256 28f29f02a2ae970cbe2929e71bb566eaa12c865d94429857fcb5dc2e30d6fbb5 SHA512 5654a0e2c9c6a88ea0894ad218caf57853685a5ceb32661c1ef25f8405f14aa87a26ca34cea88293c6ff1115f2269fdee1bf9a58ac7cfb9b38874557ddb3227f WHIRLPOOL 915c84863356b62503c4fae5d5d8475487cf34095ed92fdca391ab49326456065253b48ac182e5ec7a9eb69e16d284173c2caebd4b06b3c7a399bb89ff1ab831
-EBUILD bamtools-2.2.3.ebuild 754 SHA256 e0bba0c1728bf14927af6f29a718b67b995d1243bd6973db46e1b137317d4756 SHA512 bcce78fb0b57434dae1c1749f58ece906748e2e4ea3463d5895a1233f0ba7bf14def4fb7f7cb551288fd4dbc77a213b896fa2a13caa533ce5d21a9869ecac4a6 WHIRLPOOL d124a68431f5c66a3be884e39d8c6b6084af628797d51608ec89e59a291afaaf2c872dbb7df0bf71f277e28b9a3f1deebb47f46f113d63ab31d3ba640cb89eae
-MISC ChangeLog 1992 SHA256 c33a3b315f1aea86d580097ce9cb4f1c937f4828a5c3bc4e6d5c518b7186a218 SHA512 bbf5841252ff8f4ce9ffd4eb406046b7931353da4e2f15d57428411c536ebffdfcc1ad90285d908f6e184914d176c1655cbbb8448f0eb1a0e22e52a7de0a97ae WHIRLPOOL 68277b99619dd9be70e5cb86818210f0ab3239e27b9a135ec6d21016beb8e9a08be65370c25b239f43c237f8e45a99718465a42048a5fb45eae63dbf1f13ed60
+EBUILD bamtools-2.3.0.ebuild 754 SHA256 a3f52d5593dc61b0e662c675f8495ecb65106e7df8094ce3e26b1f887fd78774 SHA512 0e794cb31b51e1db3ce737334b81125c621b128ca878c4a8507a67bc61e8ca521b1f17695726eacafff25e6ce1d2527b272b476b8ec7086e1d16d902d338ba72 WHIRLPOOL 0f9af9afc8da4c80144b8223b69f6f6c8a4bb3c3266d8418745ecaf3552e7264df8d9bc5e470b192d7d1d24cb3381a8c78b33afd98976a2382a06ce064b77c59
+MISC ChangeLog 2233 SHA256 ef7f962abd2e9877dabc290266685ac5e02a67eaab0a797d9bc7579ec290d317 SHA512 beca82b599829c681d5a8b81cc5c473205ff8199a97e1bfcad8b58a0e67247023bb8e6f3c87f493c46910c33729a2a0bf10369fdf3f251846a7dd38797d54f89 WHIRLPOOL 7a511f4808aaf95e48ed54ed6c4b84fa6ea7190d1edbe738b84e163ab05c408cb81e4cec864c3042d35cb6f681169103df7987cce8559607813dc9bd7c602578
 MISC metadata.xml 587 SHA256 12e5a588b0eab0985e42b69a8ce0e10ac95da487eda0a3ff40f72b2dd1c846d6 SHA512 00238b407808cc61efabe242bb239769bcb269bca104c77a6e05b1918baf90ab839fc1a59e3d30577ee27c8268662f2b85ec6b7a4769e66d39458eff98d1d88b WHIRLPOOL 533c493254ff6252e1cd8b06fd1f1a30da9fa036ea7ed931d73477d25a10875f5d7e31233c2b330677f4e7ae6cb29d62838156522f13c8d35431fe1c4f597ee0
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.20 (GNU/Linux)
+Version: GnuPG v2.0.21 (GNU/Linux)
 
-iEYEAREIAAYFAlIcvscACgkQVWmRsqeSphMHVgCfabN8qQMKoEWzBQ/Q0RFik64/
-8qAAn1IPlG+LlD7u8qdy9gQ9TQR/pwbW
-=J/Of
+iQIcBAEBCgAGBQJSOHcwAAoJELnU8jG9FVirpBMP/i1UeWCGutQXgcRS106p/iH8
+dWHMBluJXfc6+7KJGWG3/HO2bfF2e0PasDvSa9rQVbkH/bNpruy3VByWM8wGj7pM
+1a1P8iAKr0fc5122ef3LmZ2Z3HVvVxgrOIKWrwFbrKNyOfSZzhKIaSBL7RI/MoV/
+0YZNeoCYC++8+/horiHn0an5h5bOBFDaQ4negQgJ/lxCqKPqri5hs0U/R6EQ6tuZ
+8e96+SX3efO4PkyGiFV5Z2n7uNPBRS1EKz4Qa/nwRemDlwnP+hKSJ1cdPyyuXal+
+lognwCQbTMiVPnO6pktIuz7OhrHO+RxgaRlj0cxR/1fvCzj1j/G/5NrZ01xoku9e
+Vtp9FAujyF5Pp3DeFZB4Obh2AotemRMf73qDbA5InZ4uaBEETTsiJ6IlZ4L6Ft/p
+ACvoz2134roUmynXYg8JR45PkEDRz4auJIht2qM0PKeyTHWWMRZOWaviUy01Zo9n
+I+NSUPbs5pf56qzb0bcKyyNE/40+DvWKxKHBc/BvGtRQ3afXVwBjqhYxPjRh+voQ
+AecKYmpGTfye4iF38uyImsqsQTE3vIWIavhlC3jy8w6LOa4ctqOPhHkZRQ1pzNkD
+aZLn+2fR4LWc45uTsYw1vOlZqj0TWTcu5/eCHcpyrMK23FW0DUKggeuwlVcOIIbn
+Rx9zOjDa/NlK4gheVE/1
+=NTyJ
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/bamtools/bamtools-2.2.3.ebuild b/sci-biology/bamtools/bamtools-2.3.0.ebuild
index 5cb0fbf1211b..b7153e88486e 100644
--- a/sci-biology/bamtools/bamtools-2.2.3.ebuild
+++ b/sci-biology/bamtools/bamtools-2.3.0.ebuild
@@ -1,8 +1,8 @@
 # Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/bamtools-2.2.3.ebuild,v 1.3 2013/03/01 08:16:21 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bamtools/bamtools-2.3.0.ebuild,v 1.1 2013/09/17 15:37:30 jlec Exp $
 
-EAPI=4
+EAPI=5
 
 inherit cmake-utils
 
diff --git a/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch b/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch
new file mode 100644
index 000000000000..c07c59d2cddd
--- /dev/null
+++ b/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch
@@ -0,0 +1,23 @@
+--- bamtools-2.3.0/src/api/CMakeLists.txt.ori	2013-08-27 18:00:43.000000000 +0200
++++ bamtools-2.3.0/src/api/CMakeLists.txt	2013-08-27 18:00:47.000000000 +0200
+@@ -54,8 +54,8 @@
+ target_link_libraries( BamTools-static ${APILibs} )
+ 
+ # set library install destinations
+-install( TARGETS BamTools        LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
+-install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
++install( TARGETS BamTools        LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin")
++install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}")
+ 
+ # export API headers
+ include(../ExportHeader.cmake)
+--- bamtools-2.3.0/src/CMakeLists.txt.ori	2013-08-27 18:03:10.000000000 +0200
++++ bamtools-2.3.0/src/CMakeLists.txt	2013-08-27 18:03:23.000000000 +0200
+@@ -6,7 +6,6 @@
+ # ==========================
+ 
+ add_subdirectory( api )
+-add_subdirectory( third_party )
+ add_subdirectory( toolkit )
+ add_subdirectory( utils )
+